PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA021316-PA

Common Name

OsI_22807

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CPP

Protein Properties

Length: 426aa MW: 46579.4 Da PI: 8.3192

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA021316-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.2	2.4e-16	134	173	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC+dCkN e BGIOSGA021316-PA 134 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCQDCKNFE 173 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	19.788	79	174	IPR005172	CRC domain
SMART	SM01114	1.5E-18	134	175	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.9E-13	137	172	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MEKKQMQQQP QQPESEPEPA APAPAAAAAE AKATPPQPQP QQKPAAPVQP QMPTPRPWPV 60 AFIPPKPVAE IKSTPSTKRK KHCNCKNSQC LKLQEAITVR SNGIQKPSKL KIENGSNALN 120 LRKDDAGAPA SLPKHNKGCH CKKSGCLKKY CECFQANILC SKNCKCQDCK NFEGSEELRL 180 ITQGDNSSDR NNIQHAANVA LNGAIGSSGY RYSPVRRKRP PEDHLYQKLN GEGSTMQTQF 240 QEANHVDSSE ITSSTGLEGC YSNYQCRSNV VYRSALANTI SPTDATGLAK HLVIVCRKAA 300 DAFLTTAENK GEMEVEREIH TDSHGATNMD QQNGGDFGPC CNSLEDSRPA SPGTQALMCD 360 EQGSTFGTDY RISFPVALHD QDTSELNAQQ EKAVLTGFRD YLRTVITRGK INGTEFAKIF 420 LSLKRC

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MEKKQMQQQP QQPESEPEPA APAPAAAAAE AKATPPQPQP QQKPAAPVQP QMPTPRPWPV  60
AFIPPKPVAE IKSTPSTKRK KHCNCKNSQC LKLQEAITVR SNGIQKPSKL KIENGSNALN  120
LRKDDAGAPA SLPKHNKGCH CKKSGCLKKY CECFQANILC SKNCKCQDCK NFEGSEELRL  180
ITQGDNSSDR NNIQHAANVA LNGAIGSSGY RYSPVRRKRP PEDHLYQKLN GEGSTMQTQF  240
QEANHVDSSE ITSSTGLEGC YSNYQCRSNV VYRSALANTI SPTDATGLAK HLVIVCRKAA  300
DAFLTTAENK GEMEVEREIH TDSHGATNMD QQNGGDFGPC CNSLEDSRPA SPGTQALMCD  360
EQGSTFGTDY RISFPVALHD QDTSELNAQQ EKAVLTGFRD YLRTVITRGK INGTEFAKIF  420
LSLKRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-12	73	183	4	132	Protein lin-54 homolog
5fd3_B	2e-12	73	183	4	132	Protein lin-54 homolog
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.80440	1e-119	panicle

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT836256	0.0	CT836256.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111J17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641295.1	0.0	protein tesmin/TSO1-like CXC 7
TrEMBL	B8B1C4	0.0	B8B1C4_ORYSI; Uncharacterized protein
STRING	OBART06G13280.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5755	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	4e-55	Tesmin/TSO1-like CXC domain-containing protein