PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA020891-PA

Common Name

OsI_23697

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 286aa MW: 30341 Da PI: 6.9182

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA020891-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.8e-09	117	164	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq BGIOSGA020891-PA 117 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 164 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-15	111	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.93E-10	111	168	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	113	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	113	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	117	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	119	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MHHHSPPPPP DLSSAVGEIH PPLASAARSS SNGGGSGGSF TALLGLPTSQ AMELLLPTAA 60 ASAPPPPPAF PADPHLGKAA AKKGKTAASG EDGGDGGEDE KPAYVHVRAR RGQATDSHSL 120 AERARREKIN ARMELLKELV PGCSKVSGTA LVLDEIINHV QSLQRQVEYL SMRLAAVNPR 180 VDFGGLDNFL TTECGRITGL NYKNGMDLEQ VTWPDMGVHG ARNLMQLQQQ FWHGDLAHPL 240 QPPSQWEKRT DTNPPVFSNS SSSLFGYDLA SSGAPAQTGN KLKTEL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.4952	0.0	flower\| leaf\| panicle\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32980993	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070970	0.0	AK070970.1 Oryza sativa Japonica Group cDNA clone:J023066J03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641463.1	1e-153	transcription factor bHLH48 isoform X2
Swissprot	Q8VZ02	2e-48	BH048_ARATH; Transcription factor bHLH48
TrEMBL	B8B4L6	0.0	B8B4L6_ORYSI; Uncharacterized protein
STRING	ONIVA06G24740.1	1e-154	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-51	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]