PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA020785-PA

Common Name

OsI_23898

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 313aa MW: 32802.2 Da PI: 8.4003

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA020785-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.8	8.6e-07	165	207	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+ L++e+ l+ + +l +e+ BGIOSGA020785-PA 165 RPRKKMRLPEIQQLVRSLTVENDGLREEMVALQRACTALSKEN 207 89***********************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.9E-4	165	204	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MTAADAEACA VAAAADIICS LRGADLAGWT PPWGTAAAKG KEVVVEEEEE ELAWPTVARG 60 KRSRSSRRRS PSGSGSAATK GRWARGSPAS PLDYSGGSGS GSAASTSGCE DGAFCSPPPP 120 PPPVVTAAAA TTPTAAPTPS PAKVGPAGRR QLILPTPPPR PAGQRPRKKM RLPEIQQLVR 180 SLTVENDGLR EEMVALQRAC TALSKENCKL ELQGVLLTVH ACFVFNQPYM SGIFPPIKNA 240 MLPGHDLNLC TPTRILDMTR LEKSSKRNGT KSEGQQARPQ PDEPAAKQES QNGFVLPDLN 300 LPVEDMAADG SAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	170	RPRKKMR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.5936	1e-168	callus\| flower\| leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32975161	1e-168

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644355.1	1e-106	uncharacterized protein LOC4341662
TrEMBL	B8B0R1	0.0	B8B0R1_ORYSI; Uncharacterized protein
STRING	ONIVA06G26680.1	1e-109	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51