PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA020682-PA | ||||||||
Common Name | ARF17, OsI_023310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 917aa MW: 101808 Da PI: 6.2107 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.6e-24 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + BGIOSGA020682-PA 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 222 99*****************************86555544..8************************************************..7 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ BGIOSGA020682-PA 223 NDNNQLLLGIRRA 235 777778***9997 PP | |||||||
2 | Auxin_resp | 118 | 7.6e-39 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld rWpnS+Wrs+k BGIOSGA020682-PA 260 AAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 343 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-48 | 119 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-43 | 125 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.82E-22 | 133 | 234 | No hit | No description |
PROSITE profile | PS50863 | 13.239 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-23 | 134 | 235 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-25 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.3E-34 | 260 | 343 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.22E-7 | 783 | 862 | No hit | No description |
Pfam | PF02309 | 2.6E-8 | 783 | 871 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.1 | 786 | 870 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 917 aa Download sequence Send to blast |
MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV 60 AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP 120 AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH 180 GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT 240 VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLSKY VKAVYHTRIS 300 VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL 360 WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG 420 GLGMNPWMQP RFDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL 480 PSQILQQVQP QFQQQQYLQN INETTIQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE 540 SQQQQQQQSQ CMQVPQHQQM QQQKNMTNYQ SVPNALSPFS QLSSPSQSSP MTLQTVLPFS 600 QPQSYPDTSM SSLSPSNTST MHNALRPFSS EAPSHLSMPR PTAVPVPDPW SSKRVAVESL 660 LPSRPQVTSQ MEQLDSTAPS IPQSSALAPL PGRGCLVDQD GNSDPQNHLL FGVNIDSQSL 720 LMQGGIPSLQ GENDSTAIPY STSNFLSPLQ NDFPLDQTLS SADCLDESGY VPCSQNSDQV 780 INRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLENPL RSGWQLVFVD 840 REDDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKPFEL LSSAPGKRLG SSCDDYVSRQ 900 ESRSLSTGIA SVGSVEF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 27 | 364 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.98126 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32988489 | 0.0 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK103280 | 0.0 | AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643843.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | A2YG67 | 0.0 | ARFQ_ORYSI; Auxin response factor 17 | ||||
TrEMBL | A0A0E0GD42 | 0.0 | A0A0E0GD42_ORYNI; Auxin response factor | ||||
TrEMBL | A0A2Z4HVY0 | 0.0 | A0A2Z4HVY0_ORYSA; Auxin response factor | ||||
STRING | ONIVA02G35510.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|