PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA020503-PA | ||||||||
Common Name | OsI_24525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 184aa MW: 20280.6 Da PI: 7.3771 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.5e-06 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+++F++ + H+r+H BGIOSGA020503-PA 56 YPCPLCDRHFPTEKAVHGHMRSH 78 99********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.73E-7 | 55 | 130 | No hit | No description |
Pfam | PF13912 | 5.7E-6 | 56 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.055 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0013 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.6E-8 | 107 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.4 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAGQVFVHHL GGGSGGDDPT HPWLSLKSSH EMDDAVASWR EKLADMAAAD ERTGRYPCPL 60 CDRHFPTEKA VHGHMRSHPG RGWRGMEPPR EPSPGDLALA ADGKRYRYVC DRCKAPFETR 120 QALGGHRASH STKKGCSWHA KQLAMAKPPK NDFDLNHLSL EAIQAAAQEE QAAQEGNKDE 180 EPKN |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993306 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642837.1 | 1e-135 | zinc finger protein ZAT2 | ||||
TrEMBL | A0A0E0HVS6 | 1e-134 | A0A0E0HVS6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YH63 | 1e-134 | A2YH63_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA06G31020.1 | 1e-135 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 5e-15 | C2H2-like zinc finger protein |