PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA020501-PA | ||||||||
Common Name | OsI_24535 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 448aa MW: 49155.2 Da PI: 4.9832 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 62 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ BGIOSGA020501-PA 62 REKWTEEEHDKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 106 789*****************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.48E-16 | 56 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.585 | 57 | 111 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.2E-16 | 60 | 109 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-10 | 62 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-14 | 62 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.40E-11 | 64 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MPQLEEKDSS DLAINKGPSL DLVKSPLMMN DASATVTAMQ PNEGMEEFPV KVRKPYTITK 60 QREKWTEEEH DKFLEALKLY GRSWRQIQEH IGTKTAVQIR SHAQKFFSKV VREPGSNNAI 120 EIPPPRPKRK PLHPYPRKCA NSGSDANPAT AQLKLAPGSS SSGSDQENGS PISVLSAMQS 180 DAFGSSVSNP STRCTSPASS DDGNNIPTFT SGEDNNVPCE PTVIDPSQSH KEIDQDRKDV 240 NNMSEEDSSE EEVQETSLKL FGRTVVIPDP RKRSSSDPKH ESEEQISQPS NEEMLQASSS 300 VGEIPAAYCA PNGWFMSYNS FPFQFGESAA DARIPPLHVW WPYYGFAPIS HPRGLSTVMQ 360 QTEGSDESDG GKSHSSESSS DSGENVQMTA PQSSRIVESL GAIYVRDSGS SFELKPSANS 420 AFVRVKPSNS GDEEVIRGFV PYKRCKFQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18955 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 194396096 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT829523 | 0.0 | CT829523.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644385.1 | 0.0 | protein REVEILLE 1 isoform X1 | ||||
TrEMBL | A0A0E0HVU1 | 0.0 | A0A0E0HVU1_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8B2Y4 | 0.0 | B8B2Y4_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA06G31120.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7783 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 2e-38 | MYB_related family protein |