PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020351-PA
Common NameOsI_20967
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 319aa    MW: 34934.5 Da    PI: 10.5405
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020351-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-131197186
          trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                      +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         st+++f +l+
  BGIOSGA020351-PA 11 CWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARVMP------STWSFFPELD 97
                      7******************************************99999999********************999886......5899999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-26999No hitNo description
Gene3DG3DSA:1.10.10.605.9E-41274IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTGLLPPWED CWSEGETEAL VRAWGSRYVE LNRGNLRQKQ WQEVADAVNS RRGAAARRRP  60
PRTDVQCKNR VDTLKKKYKA ERARVMPSTW SFFPELDRLV GPTLSASASK RPSPSPSPSP  120
VPPPPHFAMP IHPSAVRKPP SPSPSPSPPP PMALPLPSYR RGSPLPAAAL IQQEAAAAAA  180
AAVSDSEDSE GPGDNNNHNA QRSPSQSLSS RSGNSNKRSR QEVDGGFREL ARAIEAFAEM  240
YERVESAKQK QALEIERQRI DFLKQLEVKR MENFVDAHVK LARAKRIKKH AGTAPDGIGA  300
AELVSSVAAL PFLSTSTYI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.353560.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379917370.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639809.11e-163trihelix transcription factor ASIL2
TrEMBLA2Y7E80.0A2Y7E8_ORYSI; Uncharacterized protein
STRINGONIVA05G26860.11e-163(Oryza nivara)
STRINGORGLA05G0221200.11e-163(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.14e-29sequence-specific DNA binding transcription factors