PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020349-PA
Common NameOsI_20964
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 346aa    MW: 37432.3 Da    PI: 10.5591
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020349-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.91.3e-1340126186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         st+++f +l+
  BGIOSGA020349-PA  40 CWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARVMP------STWSFFPELD 126
                       7******************************************99999999********************999886......5899999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2638128No hitNo description
Gene3DG3DSA:1.10.10.602.8E-438110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEVREMAVAA AAAAAASSGG GGGGLRMPPP NPNLPYREDC WSEGETEALV RAWGSRYVEL  60
NRGNLRQKQW QEVADAVNSR RGAAARRRPP RTDVQCKNRV DTLKKKYKAE RARVMPSTWS  120
FFPELDRLVG PTLSASASKR PSPSPSPVPP PPHFAMPIHP SAVRKPPSPS PSPSPPPPMA  180
LPLPSYRRGS PLPAAALIQQ EAAAAAAAAV SDSEDSEGPG DNNNHNAQRS PSQSLSSRSG  240
NSNKRSRQEV DGGFRELARA IEAFAEMYER VESAKQKQAL EIERQRIDFL KQLEVKRMEN  300
FVDAHVKLAR AKRIKKHAGT APDGIGAAEL VSSVAALPFL STSTYI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.353560.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379917370.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639809.10.0trihelix transcription factor ASIL2
TrEMBLA0A0E0HI510.0A0A0E0HI51_ORYNI; Uncharacterized protein
TrEMBLA2Y7E50.0A2Y7E5_ORYSI; Uncharacterized protein
STRINGONIVA05G26860.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-30sequence-specific DNA binding transcription factors