PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA020315-PA | ||||||||
Common Name | OsI_20876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | RAV | ||||||||
Protein Properties | Length: 394aa MW: 41360.9 Da PI: 10.055 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.5 | 1.4e-12 | 67 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++ a+++++g BGIOSGA020315-PA 67 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 115 89****9888.8*********......44**********99*************98 PP | |||||||
2 | B3 | 93.3 | 1.7e-29 | 193 | 306 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT......................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f+k+ tpsdv+k++rlv+pk++ae+h gg + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+ BGIOSGA020315-PA 193 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlppptttssvaaaadaaaGGGECKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKD 285 89***************************99999999888888888885566699************************************** PP HT--TT-EEEEEE-SSSEE.. CS B3 72 ngLkegDfvvFkldgrsefel 92 +gL +gD v F++ ++++l BGIOSGA020315-PA 286 KGLHAGDAVGFYRAAGKNAQL 306 ************765555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.7E-16 | 67 | 123 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-8 | 67 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.98E-23 | 67 | 123 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-19 | 68 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-26 | 68 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.862 | 68 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-39 | 183 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-28 | 191 | 311 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-26 | 191 | 298 | No hit | No description |
Pfam | PF02362 | 1.2E-26 | 193 | 308 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-21 | 193 | 313 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.167 | 193 | 314 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MDSTSCLLDD ASSGASTGKK AAAAAASKAL QRVGSGASAV MDAAEPGAEA DSGGERRGGG 60 GGKLPSSKYK GVVPQPNGRW GAQIYERHQR VWLGTFTGEA EAARAYDVAA QRFRGRDAVT 120 NFRPLAESDP EAAVELRFLA SRSKAEVVDM LRKHTYLEEL TQNKRAFAAI SPPPPKHPAS 180 SPPSSAAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LQLPPPTTTS SVAAAADAAA 240 GGGECKGVLL NFEDAAGKVW KFRYSYWNSS QSYVLTKGWS RFVKDKGLHA GDAVGFYRAA 300 GKNAQLFIDC KVRAKPTTAA AAAAFLSAVA AAAAPPPAVK AIRLFGVDLL TAAAPELQDA 360 GGAAMTKSKR AMDAMAESQA HVVFKKQCIE LALT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-46 | 187 | 315 | 2 | 115 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-46 | 187 | 315 | 2 | 115 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9064 | 1e-133 | callus| leaf| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00025 | PBM | Transfer from AT1G68840 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637817.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
Swissprot | Q6L4H4 | 0.0 | Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | A2Y761 | 0.0 | A2Y761_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA05G26000.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 6e-95 | RAV family protein |
Publications ? help Back to Top | |||
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