PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020087-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 329aa    MW: 34943.2 Da    PI: 6.9849
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020087-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.95.9e-15259302548
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                       +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN++Lkk+
  BGIOSGA020087-PA 259 RRQKRMIKNRESAARSRARKQAYTNELENKVLRLEEENERLKKQ 302
                       79***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-14253302No hitNo description
SMARTSM003386.9E-10255311IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.553257302IPR004827Basic-leucine zipper domain
CDDcd147078.82E-25259313No hitNo description
PfamPF001701.4E-12259302IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10259304No hitNo description
PROSITE patternPS000360262277IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MASHAGGSGG GGGGSGRDAG SAQRGSMQGL ARQGSLYGLT LNEVQSQLGE PLLSMNLDEL  60
LKSVFPDGVD LDGGGGGIAG QSQPALGLQR QGSITMPPEL SKKTVDEVWK GIQDVPKRGA  120
EEGGRRRRER QPTLGEMTLE DFLVKAGVVT DPNDLPGNMD VVGGAAAAAA GTSDLNAGAQ  180
WLQQYHQQAL EPQHPSIGAP YMATHLAPQP LAVATGAVLD PIYSDGQITS PMLGALSDPQ  240
TPGRKRGATG EIADKLVERR QKRMIKNRES AARSRARKQA YTNELENKVL RLEEENERLK  300
KQKELDEILN AAPPPEPKYQ LRRTSSAAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123130GRRRRERQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.481330.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329734160.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0633980.0AK063398.1 Oryza sativa Japonica Group cDNA clone:001-114-H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638733.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
SwissprotQ9LES31e-85AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A0E0HG570.0A0A0E0HG57_ORYNI; Uncharacterized protein
STRINGONIVA05G21710.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27073883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.13e-64ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]