PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA019993-PA | ||||||||
Common Name | OsI_20236 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 21615.4 Da PI: 10.3064 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F++ L H +H BGIOSGA019993-PA 41 FECRTCGRRFPTFQALGGHRASH 63 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.98E-7 | 39 | 63 | No hit | No description |
Pfam | PF13912 | 1.6E-11 | 40 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.554 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.98E-7 | 115 | 142 | No hit | No description |
Pfam | PF13912 | 6.8E-9 | 119 | 144 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.3 | 120 | 142 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 122 | 142 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSKRQFGEMD GGIDTARVLM LLSRRRQQHG DVGHARAARV FECRTCGRRF PTFQALGGHR 60 ASHKRPRHGA ERAPRPAGDD DVGAGAGAAL RLVGAASSLS TDEARAGGGG RRTRGAGAAH 120 GCPVCGLEFA VGQALGGHMR RHRAAAGDVA APRVKTDDVV VGDECTGGIC LDLNLTPSEN 180 CDKCRHAQLG VAVNSVQRTI LLDRPL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881071.1 | 1e-143 | zinc finger protein ZAT12 | ||||
TrEMBL | A2Y5G6 | 1e-142 | A2Y5G6_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI05G20540.1 | 1e-142 | (Oryza rufipogon) | ||||
STRING | OS05T0461200-00 | 1e-142 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-22 | C2H2 family protein |