PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019968-PA
Common NameOsI_20184
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 600aa    MW: 64417.1 Da    PI: 8.7067
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019968-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.31.7e-103794161954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  BGIOSGA019968-PA 379 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 416
                       554459******************************98 PP
2BELL74.12.2e-242603151772
              BELL  17 eeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       ++V+krY+qy++qlq+v+ssFe+vagl +a+p++s+Al+++S+hF+ Lk  i +q+
  BGIOSGA019968-PA 260 QKVCKRYRQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGIILNQL 315
                       89**************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-22151313IPR006563POX domain
PfamPF075264.2E-33156311IPR006563POX domain
PROSITE profilePS5007112.455357420IPR001356Homeobox domain
SMARTSM003891.4E-11360424IPR001356Homeobox domain
CDDcd000864.51E-14360421No hitNo description
SuperFamilySSF466893.12E-17362428IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-29363424IPR009057Homeodomain-like
PfamPF059205.3E-19377416IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MSSAAGGGGG YGGGGGEHQH QQQHHHLLLG QAAGQLYHVP QHSRREKLRF PPDHPAESPP  60
PPPPGSWPLP PAFYSYASSS SSYSPHSPTL AHSQLVAHGM PPGAATSGGA QIPSQNFALS  120
LSSASSNPPP TPRRQFGGGG GGAAGPYGPF TGYAAVLGRS RFLGPAQKLL EEICDVGGRP  180
AQLDRGSDEG LLDVDAMEAA GSVDHEMDGS DRAVADAVTV SGAEQQWRKT RLISLMEDFK  240
ALLSSLLKLA GGDPQFIYNQ KVCKRYRQYY QQLQAVVSSF ETVAGLSNAA PFASMALRTM  300
SKHFKYLKGI ILNQLRNTGK GATKDGLGKE DTANFGLMGG GAGLLRGNNV NSFSQPHNIW  360
RPQRGLPERA VSVLRAWLFE HFLHPYPTDS DKQMLAKQTG LTRNQVSNWF INARVRLWKP  420
MVEEIHNLEM RQLKNPSLDK NQLSMQHTQH SSDSSGKPCD PSNSLQGQSS SMTRNHSISA  480
SRHIEDGLSQ MPHDISGQVS FAYNGLAAHH SIAMAHHHQP DLIGTGGAAN AGGVSLTLGL  540
HQNNNRAYIA EPLPAALPLN LAHRFGLEDV SDAYVMSSFG GQDRHFTKEI GGHLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17366424159Homeobox protein Meis2
5bng_B2e-17366424159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.273080.0callus| flower| leaf| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329861250.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009160.0AK100916.1 Oryza sativa Japonica Group cDNA clone:J023133E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637721.10.0BEL1-like homeodomain protein 9
TrEMBLA2Y5B70.0A2Y5B7_ORYSI; Uncharacterized protein
STRINGOGLUM05G19970.10.0(Oryza glumipatula)
STRINGORGLA05G0163600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.19e-63TALE family protein