PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019943-PA
Common NameOsI_20137
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 392aa    MW: 42386.3 Da    PI: 6.1904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019943-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-06213232120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ C+k F+r  n++ H+
  BGIOSGA019943-PA 213 FVCHVCNKAFNRYNNMQMHM 232
                       89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-5209236No hitNo description
PROSITE profilePS5015710.388213240IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-5213232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
PROSITE profilePS508688.135258274IPR003616Post-SET domain
SuperFamilySSF576676.88E-5284320No hitNo description
Gene3DG3DSA:3.30.160.607.1E-4287320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVLRACTMVE GSSFVVVGGG GGVPFFEWLK PRSSPPPSPS SSSTTTTSSS LTAQRQPRGA  60
GTMLCLPLLG RLGEEPVDAD DGGAMNNPPV KEEVSNTTDD YAGVDLNIGL PATTGGCSSE  120
DAPMDEDEED DDDDDEEEET EDDEEKAAGL EGCKVEEEER EQVHSEGSKY YVSVGGGEDQ  180
SSNAGDVDAG AACRGRRYWI PTPAQILIGP VQFVCHVCNK AFNRYNNMQM HMWGHGREYR  240
KGPESLKGTQ ATATLAMLKL PCYCCAAGCR NNVGHPRARP LKDFRTLQTH YKRKHGAKPF  300
ACRRCAKPFA VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGGG HFPVAAAAAA  360
AAHAAAAPPK QQQRIIRFDD AMAQMHGGGL MN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.542320.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329878670.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640742.10.0protein TRANSPARENT TESTA 1 isoform X1
TrEMBLA2Y5640.0A2Y564_ORYSI; Uncharacterized protein
STRINGONIVA05G19190.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.17e-95WIP domain protein 4