PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA019942-PA

Common Name

OsI_20136

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 516aa MW: 57236.4 Da PI: 6.513

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA019942-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.9	8.1e-12	201	248	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLkke 48 k err+++NReAAr+sR+RKka++++Le+ + +++e+e ++ +++ BGIOSGA019942-PA 201 AKTERRLAQNREAARKSRLRKKAYVQQLETsriRLQQIEQELQRARSQ 248 699*************************97222444555544444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-7	198	265	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	200	244	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.9E-9	201	254	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-7	202	248	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-8	202	248	No hit	No description
PROSITE pattern	PS00036	0	205	220	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.0E-29	288	362	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MVQGEGSSWR MANDHDRAVP HSQAVAYGIQ GHAVLAAPPA NFLELQPAAA AYFGELEKAL 60 IHGTSAGAGV DHGMIQSDAY TESAGYLAAR PPTLEIFPSW PMSHLQEPYS QNSQSVGSTT 120 DSSSAQNTMS QAELVSPASM RSDSGQEQQQ QEVLMVTIDD YNYKQGLGAA IATAPSFQQH 180 AGGLDMRKHG STRKDGKLLD AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQIEQ 240 ELQRARSQVP TLRKPHKIAT SNNTILTKGA VMFDMEYTRW IDDDSKCMAE LQGALQAQLP 300 DGNLGAIVEE CMRHYDELFH LRAVLASSDV FHLMTGMWAA PAERCFLWMA GFRPSEILKM 360 LIPQLDPLTE QQLMGMCSLQ QSSEQTEEAL AQGLHQLHQS LADAVGGGPL NDGADVANYT 420 GLMALALGRL ENLESFYRQA DNLRQETLHH MRRILTTRQT ARCFLSIGEY NRRLRALSSL 480 WASRPRENFI ATENVSPTGT EFQVIQQSQQ NQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MVQGEGSSWR MANDHDRAVP HSQAVAYGIQ GHAVLAAPPA NFLELQPAAA AYFGELEKAL  60
IHGTSAGAGV DHGMIQSDAY TESAGYLAAR PPTLEIFPSW PMSHLQEPYS QNSQSVGSTT  120
DSSSAQNTMS QAELVSPASM RSDSGQEQQQ QEVLMVTIDD YNYKQGLGAA IATAPSFQQH  180
AGGLDMRKHG STRKDGKLLD AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQIEQ  240
ELQRARSQVP TLRKPHKIAT SNNTILTKGA VMFDMEYTRW IDDDSKCMAE LQGALQAQLP  300
DGNLGAIVEE CMRHYDELFH LRAVLASSDV FHLMTGMWAA PAERCFLWMA GFRPSEILKM  360
LIPQLDPLTE QQLMGMCSLQ QSSEQTEEAL AQGLHQLHQS LADAVGGGPL NDGADVANYT  420
GLMALALGRL ENLESFYRQA DNLRQETLHH MRRILTTRQT ARCFLSIGEY NRRLRALSSL  480
WASRPRENFI ATENVSPTGT EFQVIQQSQQ NQFSGF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.23469	0.0	callus\| leaf\| panicle\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32994729	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639062.2	0.0	transcription factor TGAL5 isoform X6
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	B8AYQ9	0.0	B8AYQ9_ORYSI; Uncharacterized protein
STRING	ONIVA05G19180.5	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-127	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]