PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019720-PA
Common NameOsI_19668
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 304aa    MW: 33712.8 Da    PI: 4.9577
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019720-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.51.7e-11112151142
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 
                       kfY++YA+e+GFsvr+ ++kk+  n+ei  ++++Cs+eg+++
  BGIOSGA019720-PA 112 KFYKSYAHEAGFSVRVGQHKKQ--NEEILFKRYYCSREGFDQ 151
                       6*****************9998..999************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-9112151IPR004330FAR1 DNA binding domain
SuperFamilySSF514452.65E-37150283IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.8E-41157287IPR013781Glycoside hydrolase, catalytic domain
PfamPF002321.5E-30166286IPR001360Glycoside hydrolase family 1
PRINTSPR001311.3E-9192200IPR001360Glycoside hydrolase family 1
PRINTSPR001311.3E-9208219IPR001360Glycoside hydrolase family 1
PRINTSPR001311.3E-9229246IPR001360Glycoside hydrolase family 1
PRINTSPR001311.3E-9254266IPR001360Glycoside hydrolase family 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MESSPATPWT PAQGKDVLPH QSGFDDLMNS EINPIIAVDG EPVVAVDSAY VEATAMDHAV  60
ITVEAVDAGV VAHLEQPSTP QPTSSPSIAE SCKEHLKPMV GMIFDKLTDV EKFYKSYAHE  120
AGFSVRVGQH KKQNEEILFK RYYCSREGFD QIFNFIEKCS LKTKLSPGTT VDPQGLEHAL  180
EYIRENYGNL PLYIQENGSG TLDGTLDDVE RIDCLAKYIA ATLKAIRNGA NVKGYSVWSF  240
MDLYELFGGY NTWHYGLIAV DFSSAERRRQ PRRSASWYSD FLKNNAVIRV EDGSSVSAAA  300
HAQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wcg_A7e-21156280334457THIOGLUCOSIDASE
1wcg_B7e-21156280334457THIOGLUCOSIDASE
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.744371e-129callus| flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379906211e-129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8AXF00.0B8AXF0_ORYSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-07FAR1-related sequence 12