PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019629-PA
Common NameOsI_19479
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 567aa    MW: 60419.7 Da    PI: 3.8286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019629-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.71.3e-2471461128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdk 90 
                       l pG++F+P+d++lv +yL ++++g++l+l+ vi e+d +++ Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+  +t  d 
  BGIOSGA019629-PA   7 LLPGLKFDPSDHDLVGRYLLRRLQGQPLPLDGVILEADPLSAPPWKLLAD-HGRGDEAFFFAEAHAKNGKGKRQKRtVEGGGFWQgqKTCVDG 98 
                       579***************************999**************743.456789*******************555599**933444455 PP

               NAM  91 evlsk.........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                       e l+          +         + k +L f+  + ++g ++ Wvmhey++
  BGIOSGA019629-PA  99 ERLCVpddgdgsggG--GggleiAWRKYVLSFFA-NGERG-SSGWVMHEYAV 146
                       544445666655550..055565899999****4.44444.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-304165IPR003441NAC domain
PROSITE profilePS5100527.3567165IPR003441NAC domain
PfamPF023659.7E-159145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAAADGLLPG LKFDPSDHDL VGRYLLRRLQ GQPLPLDGVI LEADPLSAPP WKLLADHGRG  60
DEAFFFAEAH AKNGKGKRQK RTVEGGGFWQ GQKTCVDGER LCVPDDGDGS GGGGGGLEIA  120
WRKYVLSFFA NGERGSSGWV MHEYAVTAPD GLASSQLRLY RVRFSGYGKK RKREPQCPGA  180
HGDDDGELQR APPPRSMAGT ALLEERGPLP HPVLGPASVV DQCTDQGSSG VIDDSSLVFR  240
DLPDLIDLPV AEEADASHGA ETALLNEHLP LPPPQLFVPP TAVPLDLADD SNGADQNSYG  300
MMGDDQLLLP DLPGTINDDM PDLFVSQAEE ASAVPAISYH SSGFMGNEVA ALSDFELPES  360
YSSSDAMDGE ALALSNYEFP ESFEEDLSCI DFATANASSL GFPMDGYPMD ELFDDMPDQG  420
SSGGMDDSSV VFRDLPGLIN LPAAEEADTI GDAETALLRD LAYDSNGTDR NSYGVMGDDQ  480
DRLLLPEIPR RIDMPDLFVS QAEEAGLGGG AALDSSSGAM DGEALALSDF EFPESVEEVL  540
SCMDFSTVDM SFLDVPIDEL LDDLPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.10.0uncharacterized protein LOC107275325
TrEMBLA2Y3900.0A2Y390_ORYSI; Uncharacterized protein
STRINGORUFI05G12850.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137