PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA019580-PA

Common Name

OsI_19384

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YC

Protein Properties

Length: 327aa MW: 36610.1 Da PI: 4.9915

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA019580-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	72.5	6.4e-23	31	128	2	96
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ++ fw + ie ++ ++h lP+ +k++++ +d m+sa++P++++k celf+ eltlr+w+ a++ +r + +dia+a+t t+ + f BGIOSGA019580-PA 31 MEEFWRRSqeqIEASAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYHF 123 7789976523377777778999*********************************************************************** PP NF-YC 92 lvdiv 96 l ++ BGIOSGA019580-PA 124 LGNVL 128 *8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.62E-16	10	124	IPR009072	Histone-fold
Pfam	PF00808	2.6E-8	53	115	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-17	53	128	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAIPTKEEVE QNEEDNTFSR LQLLAQQRHA MEEFWRRSQE QIEASAGNHE HILPIDCVKN 60 VIRPKNDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD IAEAITTTES 120 YHFLGNVLRS HKALGSTAPD IDTSARKHIK LDQMTSLYHP TQEMQASRLA GYPPHVPIYP 180 PIGQMGTQHK LSPFAFMMQG ESLLNMKREN SLVNEVMVCT NKMSINNFDG ATSIGGGSSS 240 DVAIVVQQGE TTHPFSSQNA CPSLEDNYVV PMPTGHVQSF SPPTNINVKK LHQEEKNIYS 300 QDVAEEDMSN ESLEGSQKDE DLFLHEK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.24936	0.0	flower\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116011501	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639189.1	0.0	uncharacterized protein LOC4338359
TrEMBL	A2Y2Z5	0.0	A2Y2Z5_ORYSI; Uncharacterized protein
STRING	ORUFI05G11730.1	0.0	(Oryza rufipogon)
STRING	OS05T0304800-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13968	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	2e-18	nuclear factor Y, subunit C4