PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019054-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 278aa    MW: 31335.3 Da    PI: 6.5197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019054-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.8e-144996148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT++Ed +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  BGIOSGA019054-PA 49 KGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 96
                      79********************************************97 PP
2Myb_DNA-binding50.93.6e-16102147148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rgr T++E+ l+++++ q+G++ W++Iar ++ gRt++++k++w++++
  BGIOSGA019054-PA 102 RGRITADEERLILHLHSQWGSR-WSRIARSLP-GRTDNEIKNFWRTHM 147
                       899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0824496IPR017930Myb domain
SuperFamilySSF466892.86E-2746143IPR009057Homeodomain-like
SMARTSM007171.8E-124898IPR001005SANT/Myb domain
PfamPF002496.9E-134996IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-1950103IPR009057Homeodomain-like
CDDcd001674.79E-95196No hitNo description
PROSITE profilePS5129422.89497151IPR017930Myb domain
SMARTSM007177.0E-15101149IPR001005SANT/Myb domain
PfamPF002491.0E-13102146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-22104149IPR009057Homeodomain-like
CDDcd001674.91E-10106147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAEAEAEEEM MMRMMCGSGG NEMMKTKMKK KNREGEEEEE VSGGGRMRKG PWTEQEDVQL  60
VWFVRLFGER RWDFLAKVSG LKRTGKSCRL RWVNYLHPGL KRGRITADEE RLILHLHSQW  120
GSRWSRIARS LPGRTDNEIK NFWRTHMRKI AHHAKKKTNS PSPAPTTSSG SLSSSLTTAT  180
TTMATAAALQ ESSSCGGDDE AVDQLVAAAT TPASQLLTMD YTMDQLWNDI AAAEADTSCY  240
DAAAMASPPS PVWEFCTDYS LWRIDDEEYY KKMLDASQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25491494103MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-254914958157MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-254914958157MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25491494103C-Myb DNA-Binding Domain
1msf_C2e-25491494103C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.582600.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882970.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939210.0AC093921.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0041A22, complete sequence.
GenBankAC1085040.0AC108504.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1654_B10, complete sequence.
GenBankAK1116340.0AK111634.1 Oryza sativa Japonica Group cDNA clone:J013119H17, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639553.11e-146transcription factor MYB48
SwissprotQ4JL767e-67MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A0E0H8M60.0A0A0E0H8M6_ORYNI; Uncharacterized protein
STRINGONIVA05G01120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-61myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]