PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA018951-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRAS

Protein Properties

Length: 629aa MW: 71919.6 Da PI: 6.7093

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA018951-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.6	4.2e-113	259	626	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 lL++cA+a++s+++ a++lL +++++a pdgd qRla +f+ +L+arla+++s++y++l +++ts + + l+a++l++ ++P+ +++ BGIOSGA018951-PA 259 LLIQCAQAIASNNHPFASELLRKIRHHALPDGDGSQRLANCFADGLEARLAGTGSQMYEKLMAKQTS---TRDMLKAYHLYFVACPFEMVTYY 348 8**************************************************************99...899**************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 N++I +a+eg++++Hi+Df+i G+QWp+L+q La+R++gpp+lRiTgv+ p++g +e++eetg+rLa++A+ ++vpf+++ +a+r+e BGIOSGA018951-PA 349 FSNKTIIDALEGKTTLHIVDFGILFGFQWPCLIQRLAKREGGPPKLRITGVDVPQPGfrPHERIEETGKRLAEYANMFNVPFQYHG-IASRWE 440 ****************************************************9*************************.7* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 ++ +e+L+++++E+l++n++ ++ +l de+ +++s+rd+vL+++k+++P+v+++ + ++s+ Fl+rf e l +ys+lfd+l++++pr++e BGIOSGA018951-PA 441 TICIEDLSIDKDEVLIINCMSRMRKLGDETENIDSARDRVLHMMKRMNPQVFILGVVNGLYSSPFFLTRFREVLFHYSSLFDMLDNNVPRNHE 533 ***************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +ri vE+ l+g+++ n+vacegaer+er e++++W++r+ +aGFk+ p+++ + + + + +++d + ++e+sg+l++gWk+r + ++S W BGIOSGA018951-PA 534 ARILVEKDLFGNDALNAVACEGAERIERPESYKQWQMRILRAGFKQRPVNQAILNRSVHYKELYHED-FVIDEDSGWLLQGWKGRIIQALSTW 625 ***********************************************9999999999999955.*********************** PP GRAS 374 r 374 + BGIOSGA018951-PA 626 K 626 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65	230	607	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-110	259	626	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MDSPEYCQTN SNITLDYINR ILMEEDIDEK ISIKKGQDAL QATEKPFYDI LGKAYPSSSK 60 ETAINGDSQA DYPDNGSSSY HEQACSGSFV SDLLGSQDAH SITTDWSSEF DRLALQFRRG 120 VEEAKRFIPN IEKLVDDPEK NGLYACKQTT ETTEQKGKHE NKIRNHPHDP HVEHIELMEA 180 RNSKHMAIST SETIRDEMFD SILLCNRQLP GEVANLRGMM AKEASDNPKK FQSKGYGKGQ 240 RKPHSSKKKQ KEAIDLSVLL IQCAQAIASN NHPFASELLR KIRHHALPDG DGSQRLANCF 300 ADGLEARLAG TGSQMYEKLM AKQTSTRDML KAYHLYFVAC PFEMVTYYFS NKTIIDALEG 360 KTTLHIVDFG ILFGFQWPCL IQRLAKREGG PPKLRITGVD VPQPGFRPHE RIEETGKRLA 420 EYANMFNVPF QYHGIASRWE TICIEDLSID KDEVLIINCM SRMRKLGDET ENIDSARDRV 480 LHMMKRMNPQ VFILGVVNGL YSSPFFLTRF REVLFHYSSL FDMLDNNVPR NHEARILVEK 540 DLFGNDALNA VACEGAERIE RPESYKQWQM RILRAGFKQR PVNQAILNRS VHYKELYHED 600 FVIDEDSGWL LQGWKGRIIQ ALSTWKVET

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MDSPEYCQTN SNITLDYINR ILMEEDIDEK ISIKKGQDAL QATEKPFYDI LGKAYPSSSK  60
ETAINGDSQA DYPDNGSSSY HEQACSGSFV SDLLGSQDAH SITTDWSSEF DRLALQFRRG  120
VEEAKRFIPN IEKLVDDPEK NGLYACKQTT ETTEQKGKHE NKIRNHPHDP HVEHIELMEA  180
RNSKHMAIST SETIRDEMFD SILLCNRQLP GEVANLRGMM AKEASDNPKK FQSKGYGKGQ  240
RKPHSSKKKQ KEAIDLSVLL IQCAQAIASN NHPFASELLR KIRHHALPDG DGSQRLANCF  300
ADGLEARLAG TGSQMYEKLM AKQTSTRDML KAYHLYFVAC PFEMVTYYFS NKTIIDALEG  360
KTTLHIVDFG ILFGFQWPCL IQRLAKREGG PPKLRITGVD VPQPGFRPHE RIEETGKRLA  420
EYANMFNVPF QYHGIASRWE TICIEDLSID KDEVLIINCM SRMRKLGDET ENIDSARDRV  480
LHMMKRMNPQ VFILGVVNGL YSSPFFLTRF REVLFHYSSL FDMLDNNVPR NHEARILVEK  540
DLFGNDALNA VACEGAERIE RPESYKQWQM RILRAGFKQR PVNQAILNRS VHYKELYHED  600
FVIDEDSGWL LQGWKGRIIQ ALSTWKVET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-47	260	626	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079022	0.0	AC079022.2 Oryza sativa chromosome 5 clone P0574H01, complete sequence.
GenBank	AC079356	0.0	AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881341.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0D3G2F5	0.0	A0A0D3G2F5_9ORYZ; Uncharacterized protein
STRING	OBART05G00760.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-172	GRAS family protein