PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018950-PA
Common NameOsI_18161
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 736aa    MW: 83487.9 Da    PI: 7.6902
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018950-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.36.8e-1113557281374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+av+++d   a++l++++++++spdgd++qRla+y++ +L+arla+  s++y++l +s+ts    ++ l+a++l+  ++P+ + 
  BGIOSGA018950-PA 355 LRNLLIHCAQAVAADDRISASELVKKIRQHSSPDGDSNQRLAFYLVDGLEARLAGIESQVYRKLMASRTS---AESLLKAYSLYLSACPFERA 444
                       689*************************************************************999998...89999*************** PP

              GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                       s+  aNq+Il+a +g+  ++vHi+ f+i  G+QWp+L+q La+ ++gpp+lRiTg++ p++g    e +eetg+rLa++A+ ++vpf+++  +
  BGIOSGA018950-PA 445 SFAYANQTILDASKGQqpRKVHIVHFGICTGFQWPSLIQRLANEEGGPPKLRITGIDMPQPGfhPCEIIEETGKRLADYANLFKVPFQYQG-I 536
                       ****************999******************************************9999999***********************.7 PP

              GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                       a+r+e++++e+L+++++E+l+Vn+++++++l de vs++s+rd+vLk+++ ++P+v+++   + +++s+ F +rf e l +ys+lfd+++a++
  BGIOSGA018950-PA 537 ASRWETVQIEDLNIDKDEVLIVNCMFRMKNLGDEMVSMNSARDRVLKIMRMMNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMIDANV 629
                       ********************************************************************************************* PP

              GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                       pr++e+r+++E  l+g+e+ n++acegaer+er e++++W++r  +aGFk++p++  + k++  + + ++ + +  +e+ g+l++gWk+r ++
  BGIOSGA018950-PA 630 PRDNEARKMIEGGLFGQEALNIIACEGAERTERPESYKQWQARCLKAGFKQLPVDPATLKEIINMKKGIYHEDFVADEDGGWLLQGWKGRVIY 722
                       **********************************************************************999******************** PP

              GRAS 369 svSaWr 374
                       ++S W+
  BGIOSGA018950-PA 723 AISTWK 728
                       *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.434329708IPR005202Transcription factor GRAS
PfamPF035142.4E-108355728IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MVIELPFDNQ YTTTETEQPH DGSSCSSQQQ LSLYNYSPSD PQLFSQPTTG SRTYLSGAVT  60
IPGICNDKSN LGQQQFQIDA ALSLEYQRIR SSDALCYISR VLMEDVDERV DLHQGEAALQ  120
AAEKPFYDIL GQVYPPSLNR LALHSANEPD TPDESSSRNN YHNRYHSSHS SFNMLQPLPT  180
PLSPYSYGRS LFLPNQRLVS TAWTSTFGIP GFQIRRGAEE AKRFVPIIDK LVIDLDTDRG  240
LSISKMTTKA KVGDKKRYAI FELTDQRHSP YTTDLDILEG RNSKRYAITY CEIIRNDMFD  300
RVLLCYGVEN FAEASNLRKI MTKQARKNSL NGQTRGSAQR KLRGMKQLKK DVVDLRNLLI  360
HCAQAVAADD RISASELVKK IRQHSSPDGD SNQRLAFYLV DGLEARLAGI ESQVYRKLMA  420
SRTSAESLLK AYSLYLSACP FERASFAYAN QTILDASKGQ QPRKVHIVHF GICTGFQWPS  480
LIQRLANEEG GPPKLRITGI DMPQPGFHPC EIIEETGKRL ADYANLFKVP FQYQGIASRW  540
ETVQIEDLNI DKDEVLIVNC MFRMKNLGDE MVSMNSARDR VLKIMRMMNP RVFILGIVNG  600
SYSSPFFITR FKEVLFHYSS LFDMIDANVP RDNEARKMIE GGLFGQEALN IIACEGAERT  660
ERPESYKQWQ ARCLKAGFKQ LPVDPATLKE IINMKKGIYH EDFVADEDGG WLLQGWKGRV  720
IYAISTWKPN ESYLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-493597288375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0790220.0AC079022.2 Oryza sativa chromosome 5 clone P0574H01, complete sequence.
GenBankAC0793560.0AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693385.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9
TrEMBLB8AWY40.0B8AWY4_ORYSI; Uncharacterized protein
STRINGONIVA05G00700.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-159GRAS family protein