PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018654-PA
Common NameOsI_18770
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 440aa    MW: 48568.7 Da    PI: 9.6971
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018654-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.73.9e-351402941128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                       +p+G+rF+Ptd+el+ e+L++kv++        ++++ + i+   +i++++P++Lp  v+ +  + +fF++++k+y+tg+rk+r+        
  BGIOSGA018654-PA 140 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP-GVTRDGLSKHFFHRSAKAYPTGTRKRRKvladqqpd 230
                       699************.99******9987777664443344777756**********.555666799******************88******* PP

               NAM  78 ............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   +++ +W++tgk++e+++ +g+ +g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  BGIOSGA018654-PA 231 dhpqaskgrnvaAAETRWHKTGKTREITV-RGQPKGCKKILVLYtsFGKKRKAEKTSWVMHQYHL 294
                       *********99877899************.999***********55589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-35132313IPR003441NAC domain
PROSITE profilePS5100530.921140313IPR003441NAC domain
PfamPF023653.9E-16141294IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MTPRASNLTG VEIYSLVEMK WKERSGTAKT AKMAKRRGGW ENDATRMAAG EQERQASQVL  60
GEGARRHPGL DPDLRLRGSE DVVQEDWSIQ ARMSSDGASG SIGMKHDDGD HRPITGASSR  120
RCPSCGHDPD CNKPFDMVGM PAGVRFDPTD QELIEHLEAK VKDGGSTSHP LIDEFIHTIQ  180
GEDGICYTHP ENLPGVTRDG LSKHFFHRSA KAYPTGTRKR RKVLADQQPD DHPQASKGRN  240
VAAAETRWHK TGKTREITVR GQPKGCKKIL VLYTSFGKKR KAEKTSWVMH QYHLGELDDE  300
KEGELILSKV FYQTQTRSAA AAEAPVSSGA AMEVQGQQQQ VLKLQADDGH FSSAPTKKRL  360
HQDVVAQVKV DRGHHCMPAQ RHVNFNLKVT PVPTTSSFPV VVDKQLYSPV ALFRSEHLHV  420
GKNFNSSAPK SRLASPALAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.881730.0callus| flower| leaf| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422270.0AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637950.10.0NAC domain-containing protein 75 isoform X2
TrEMBLA2Y1890.0A2Y189_ORYSI; Uncharacterized protein
STRINGORGLA05G0055000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174251011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-83NAC domain containing protein 75