PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA018311-PA

Common Name

OsI_19442

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 943aa MW: 107443 Da PI: 7.1391

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA018311-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.4	1.5e-20	188	275	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++Y++YA++ GF +++s+ ++s+ +++ +++f C e +++e+ + +++rr++ + +tgCka+++v k+ d+kw+vt ++l+HnH+ BGIOSGA018311-PA 188 NYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASaGSRSRRSSRVLKTGCKARMVVVKR-DEKWVVTIVDLDHNHP 275 69**********************************999998877567888899999*******99.9************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-19	188	275	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.9E-28	400	494	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	681	717	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-5	692	719	IPR006564	Zinc finger, PMZ-type
Gene3D	G3DSA:3.30.420.10	3.6E-4	849	900	IPR012337	Ribonuclease H-like domain
Pfam	PF13456	6.0E-5	852	896	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MAQILLTSSS INPANSPTNG TLRGSSSASA AAAASASVAG AAVRHRAPFL AAAIKRSPRD 60 IYRTATRPPE PLTSSPPGDP DLARLFVGLA RSIRSVRAFF GHMEDNDDRA SAEITTDQEN 120 HLKDALIQVF AATSEHQEGE GEGAEVVQDE EIGEGVEGVR DEEIGDINSK PDKPYVGMEF 180 RDKDEAKNYY DDYARKWGFI TKISSCRRSQ ITKQYNRYEF ACHSERSSRE SGASAGSRSR 240 RSSRVLKTGC KARMVVVKRD EKWVVTIVDL DHNHPPLNPS ALMSLKPHRL IKDEDHDLLE 300 FLRTNKIPTQ RIMSVLCDLY GSMQNIPLAR KDVSNLRATM RPEAEGTCTD MAATIKYFQE 360 SQADDPSFFY SMELDSESKI TSVFWVDGVS REAYREFGDC VFFNTKYITT KYCLPFAPII 420 GMNNHGQTVL FGCVLLKAEI EETFEWVFQT FLKAMDGKVP KSIMTDQDEA MENAIANVLP 480 NTSHRRCSWY IWRNAKFKLG VLPSRLEGFE DDLRHCIDES FNVEEFERRW AAVLDRYNLA 540 SNKYMQDLYE IREKWVPCYF MDCFFPFMSI TQQSEVMEAL FKDFVHPGDI IQNFIVQYEK 600 LVQSCLDRDD KQLFLTVKTD ANLWSKFPME EQASKFYTRA IFERFQEHLK NTTMYNVVCE 660 ATPYSYLVQN VFGDQSQNRR YVVHCKLEDE TFTCVCKQYE REGLLCEHIL KVMTHRNVNL 720 IPDKYLFRRW TLKGSDSAAT RSHVPLNMAE ASTRKMRYST ICKKSVCMAS EACRTQEGYN 780 LALRSIEELT DKLAAINLTR QDQHLPRPNI CDKNGKGITM GESNTIAEKV LSESCLKDPT 840 KIRPAAFDNN SESARKRNKV MKAVQDLRSP FQGRNIKIQW IPREMNKMAD NLAKSARELS 900 SQSQMAFDCS NISHICHNSG CPTRRGLLLT PNEDVTIAHA LCF

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MAQILLTSSS INPANSPTNG TLRGSSSASA AAAASASVAG AAVRHRAPFL AAAIKRSPRD  60
IYRTATRPPE PLTSSPPGDP DLARLFVGLA RSIRSVRAFF GHMEDNDDRA SAEITTDQEN  120
HLKDALIQVF AATSEHQEGE GEGAEVVQDE EIGEGVEGVR DEEIGDINSK PDKPYVGMEF  180
RDKDEAKNYY DDYARKWGFI TKISSCRRSQ ITKQYNRYEF ACHSERSSRE SGASAGSRSR  240
RSSRVLKTGC KARMVVVKRD EKWVVTIVDL DHNHPPLNPS ALMSLKPHRL IKDEDHDLLE  300
FLRTNKIPTQ RIMSVLCDLY GSMQNIPLAR KDVSNLRATM RPEAEGTCTD MAATIKYFQE  360
SQADDPSFFY SMELDSESKI TSVFWVDGVS REAYREFGDC VFFNTKYITT KYCLPFAPII  420
GMNNHGQTVL FGCVLLKAEI EETFEWVFQT FLKAMDGKVP KSIMTDQDEA MENAIANVLP  480
NTSHRRCSWY IWRNAKFKLG VLPSRLEGFE DDLRHCIDES FNVEEFERRW AAVLDRYNLA  540
SNKYMQDLYE IREKWVPCYF MDCFFPFMSI TQQSEVMEAL FKDFVHPGDI IQNFIVQYEK  600
LVQSCLDRDD KQLFLTVKTD ANLWSKFPME EQASKFYTRA IFERFQEHLK NTTMYNVVCE  660
ATPYSYLVQN VFGDQSQNRR YVVHCKLEDE TFTCVCKQYE REGLLCEHIL KVMTHRNVNL  720
IPDKYLFRRW TLKGSDSAAT RSHVPLNMAE ASTRKMRYST ICKKSVCMAS EACRTQEGYN  780
LALRSIEELT DKLAAINLTR QDQHLPRPNI CDKNGKGITM GESNTIAEKV LSESCLKDPT  840
KIRPAAFDNN SESARKRNKV MKAVQDLRSP FQGRNIKIQW IPREMNKMAD NLAKSARELS  900
SQSQMAFDCS NISHICHNSG CPTRRGLLLT PNEDVTIAHA LCF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.50190	0.0	callus\| flower\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32974864	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639432.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B8AWK8	0.0	B8AWK8_ORYSI; Uncharacterized protein
STRING	ORGLA05G0097200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-103	FAR1-related sequence 5