PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA018244-PA

Common Name

OsI_19560, OsI_19561

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 200aa MW: 21105.8 Da PI: 6.7789

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA018244-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.2	1.7e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ + BGIOSGA018244-PA 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLQELPAQQRGDAVSSLVYEANARMRDPVYGCVGAISFLQNQVSQLQMQ 98 7****************************************************************************************** PP DUF260 94 lallkee 100 la++++e BGIOSGA018244-PA 99 LAVAQAE 105 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.606	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MGGGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGASNVSKM LQELPAQQRG 60 DAVSSLVYEA NARMRDPVYG CVGAISFLQN QVSQLQMQLA VAQAEILCIQ MQHRDDGAAH 120 QLDAAADHHP LLDQQQQQQM VVDAADAAAS FLVQNGGGGG GPAAQLISGY GSPAAGGGGG 180 HGVVHYAAAQ EHLKRESLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-48	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-48	2	107	7	112	LOB family transfactor Ramosa2.1
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Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115463328	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638859.1	1e-145	LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0D9ZXQ9	1e-143	A0A0D9ZXQ9_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0HD05	1e-143	A0A0E0HD05_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PL28	1e-143	A0A0E0PL28_ORYRU; Uncharacterized protein
TrEMBL	A0A0P0WKY8	1e-143	A0A0P0WKY8_ORYSJ; Os05g0346800 protein (Fragment)
TrEMBL	A2Y3H8	1e-143	A2Y3H8_ORYSI; Uncharacterized protein
TrEMBL	Q5W6R0	1e-143	Q5W6R0_ORYSJ; Os05g0346800 protein
STRING	OGLUM05G13250.1	1e-144	(Oryza glumipatula)
STRING	ORUFI05G13610.1	1e-144	(Oryza rufipogon)
STRING	OS05T0346800-00	1e-144	(Oryza sativa)
STRING	ONIVA05G13090.1	1e-144	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-71	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]