PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018239-PA
Common NameOsI_19572
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 272aa    MW: 28479 Da    PI: 9.8034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018239-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.1e-192065147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEde+l  av+++G+++W++I+++++ gR++k+c++rw + 
  BGIOSGA018239-PA 20 KGSWSPEEDEQLRGAVARHGPRNWTAISEEVP-GRSGKSCRLRWCNQ 65
                      799*****************************.***********985 PP
2Myb_DNA-binding43.11e-1372115146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++T++Ed l+v a++++ ++ W tIar +   Rt++++k++w++
  BGIOSGA018239-PA  72 RRPFTPDEDALIVAAHAKFANK-WPTIARLLD-ARTDNSVKNHWNS 115
                       679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.4861570IPR017930Myb domain
SuperFamilySSF466893.67E-2817113IPR009057Homeodomain-like
SMARTSM007172.3E-161968IPR001005SANT/Myb domain
PfamPF002492.0E-192065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-242173IPR009057Homeodomain-like
CDDcd001675.99E-162264No hitNo description
PROSITE profilePS5129416.22871121IPR017930Myb domain
SMARTSM007174.2E-1071119IPR001005SANT/Myb domain
PfamPF002491.0E-1072115IPR001005SANT/Myb domain
CDDcd001674.31E-974117No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1974120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLIHGEGSSS SAAAAGGKIK GSWSPEEDEQ LRGAVARHGP RNWTAISEEV PGRSGKSCRL  60
RWCNQLSPGV HRRPFTPDED ALIVAAHAKF ANKWPTIARL LDARTDNSVK NHWNSSLRRN  120
RSDDSVAIPA QSSPAAVVAG VPVLPPPPPP AKRLCVAPPT GVEHRAPPPD PPTSLSLSPP  180
GAAAAAISAS TVVGGSSAAR AEEEAVAREK ARMEQDPWLM AMMRQMITEE VQRQVSVVYS  240
LVASSAAVAA QTGNAGGVGR KGPDGRPSNG QD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-32191193103MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-32191193103C-Myb DNA-Binding Domain
1msf_C8e-32191193103C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.709160.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaves from the third leaf to rosette leaves from six-week old plants. Expression follows a development-dependent gradient in successive leaves. {ECO:0000269|PubMed:9678577}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in dry seeds (PubMed:9678577). Expressed in root vasculature, root tips and lateral root (PubMed:17675404). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:9678577}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1362210.0AC136221.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077J17, complete sequence.
GenBankAK2881280.0AK288128.1 Oryza sativa Japonica Group cDNA, clone: J080093D18, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639574.21e-143transcription factor MYB77
SwissprotQ9SN124e-52MYB77_ARATH; Transcription factor MYB77
TrEMBLB8AX170.0B8AX17_ORYSI; Uncharacterized protein
STRINGOPUNC05G11020.11e-150(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-46myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]