PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018238-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 154aa    MW: 16789.5 Da    PI: 10.8158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018238-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-182065147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEde+l   v+++G+++W++I+++++ gR++k+c++rw + 
  BGIOSGA018238-PA 20 KGSWSPEEDEQLRGPVARHGPRNWTAISEEVP-GRSGKSCRLRWCNQ 65
                      799*****************************.***********985 PP
2Myb_DNA-binding58.81.2e-1872115146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++T++Ed l+v a++++G++ W+tIar +  gRt++++k++w++
  BGIOSGA018238-PA  72 RRPFTPDEDALIVAAHAKYGNK-WATIARLLD-GRTDNSVKNHWNS 115
                       679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9681566IPR017930Myb domain
SuperFamilySSF466891.62E-3017113IPR009057Homeodomain-like
SMARTSM007176.1E-141968IPR001005SANT/Myb domain
PfamPF002495.1E-182065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-232173IPR009057Homeodomain-like
CDDcd001677.50E-132264No hitNo description
PROSITE profilePS5129425.25667121IPR017930Myb domain
SMARTSM007172.7E-1571119IPR001005SANT/Myb domain
PfamPF002491.7E-1572115IPR001005SANT/Myb domain
CDDcd001673.06E-1174117No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2374120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MLIHGEGSSS SAAAAGGKIK GSWSPEEDEQ LRGPVARHGP RNWTAISEEV PGRSGKSCRL  60
RWCNQLSPGV HRRPFTPDED ALIVAAHAKY GNKWATIARL LDGRTDNSVK NHWNSSLRRN  120
RRAAAAAAAA AASVSYQXXX XXXXXXXXXX XXXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-34191193103MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-34191193103C-Myb DNA-Binding Domain
1msf_C1e-34191193103C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.709160.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaves from the third leaf to rosette leaves from six-week old plants. Expression follows a development-dependent gradient in successive leaves. {ECO:0000269|PubMed:9678577}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in dry seeds (PubMed:9678577). Expressed in root vasculature, root tips and lateral root (PubMed:17675404). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:9678577}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639574.21e-92transcription factor MYB77
SwissprotQ9SN122e-52MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A0D9ZXV09e-93A0A0D9ZXV0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HD498e-93A0A0E0HD49_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PL539e-93A0A0E0PL53_ORYRU; Uncharacterized protein
TrEMBLI1PUP68e-93I1PUP6_ORYGL; Uncharacterized protein
TrEMBLQ5W6G69e-93Q5W6G6_ORYSJ; Os05g0350900 protein
STRINGOGLUM05G13590.12e-93(Oryza glumipatula)
STRINGORUFI05G13850.12e-93(Oryza rufipogon)
STRINGONIVA05G13470.11e-93(Oryza nivara)
STRINGORGLA05G0109400.11e-93(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-53myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]