PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018104-PA
Common NameOsI_19866
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARR-B
Protein Properties Length: 604aa    MW: 65059.7 Da    PI: 5.585
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018104-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.73.3e-15265318255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYRl 55 
                       +r  Wt+  H++Fv+a eqL  +++  Pk+i++lm+++g+  t ++v SHLQkYR+
  BGIOSGA018104-PA 265 TRFTWTTVSHTSFVRAYEQL--KDQEGPKKIKQLMELDGIfvTKTQVSSHLQKYRS 318
                       799*****************..999**************655999**********6 PP
2Response_reg58.53.8e-20251301107
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                       vl+vdD+ + +e l+ +l  +gy  v+  +++eeal+ ++++    ++++++D+ m+gmdG++ll +i+    ++p+i+++  ++  ++ + +
  BGIOSGA018104-PA  25 VLVVDDDAAYLEELKLMLLLAGY-AVTGKTTAEEALKEVDQNPedyFHIVMTDVHMSGMDGFDLLHRING---RVPVIMFSEGEDVVMVMRTV 113
                       89*********************.***************7777777**********************98...67****************** PP

                       HTTESEEEESS--HHHH CS
      Response_reg  91 kaGakdflsKpfdpeel 107
                         Ga d+ +Kp+  e++
  BGIOSGA018104-PA 114 MNGACDYMVKPMTSEAI 130
                       ***********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.22E-2621143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.1E-2822144No hitNo description
SMARTSM004481.4E-2123134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.74124138IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-1725130IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.64E-1826138No hitNo description
SuperFamilySSF466893.4E-9263322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-14264321IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-11265318IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAENNGAVPP GCKLPAGGFF GRLHVLVVDD DAAYLEELKL MLLLAGYAVT GKTTAEEALK  60
EVDQNPEDYF HIVMTDVHMS GMDGFDLLHR INGRVPVIMF SEGEDVVMVM RTVMNGACDY  120
MVKPMTSEAI KFIWKHVLRW RLSALPANAS SSLQPSDHLA AALAAVAPPP PPAVQLPAAP  180
AQARNRDGEA HEEAELSTQP PALVPSGVQE AAAAVWSSRG DGQEAPPAAV AAAAKAPSKK  240
RGASEVSDRG SNNLEATTGR KKVRTRFTWT TVSHTSFVRA YEQLKDQEGP KKIKQLMELD  300
GIFVTKTQVS SHLQKYRSWL ENERKKEEAT SSSPCNPLSY TNCLDRGYST WKQSSVITEG  360
QQSSSFSGRP IHSMATSNGC LTTTDTQAGN YVGVGAKEIE NFISSHQRSL GTAIGQESTI  420
EQASLHSEIT SVSRDAHENG NSQARGSAMR NGTSVHRCHQ TWDSQRNQVK ASAPMNWQLT  480
TVLLVIKTPG TSHPTSSSAI NNQNSKTQEM SVSQTVELGC GNDVMLDWPE LVGLEDQLDN  540
DVLMNSFFDG DLLQQGVVTA IDGTQEMLAF DSTGDLGSVP PRGLNNEIAS HENTNGKNGA  600
SSGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1022770.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160120870.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427220.0AK242722.1 Oryza sativa Japonica Group cDNA, clone: J090045F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639050.10.0two-component response regulator ORR27
SwissprotQ75HW20.0ORR27_ORYSJ; Two-component response regulator ORR27
TrEMBLA2Y4D80.0A2Y4D8_ORYSI; Uncharacterized protein
STRINGOGLUM05G16380.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159621113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-19response regulator 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]