PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018046-PA
Common NameOsI_19980
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 280aa    MW: 28059.3 Da    PI: 8.1341
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018046-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601407.8e-4440138199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++
  BGIOSGA018046-PA  40 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQD 132
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       l++++ 
  BGIOSGA018046-PA 133 LSRARF 138
                       *99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.86139140IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-4440136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAASSSASSL PLSSGSVITV SSSPAVGASS GGGGGGTGSP CAACKFLRRK CQPDCVFAPY  60
FPPDNPQKFV HVHRVFGASN VTKLLNELHP YQREDAVNSL AYEADMRLRD PVYGCVGVIS  120
VLQHQLRQLQ QDLSRARFEL SKYQAAVAVS SSNGQAAAAA AMADHFIGSA VQPNCTQNFI  180
SGGGVAAAAI GVGGGAGGGF VNDHHQFSAV QMLARSYDGE SAVARLGGAV NVSGGGGYEF  240
GYSSAMGGAG GPMSGLGPLG GGTFLKPGTA GGGDRPTAAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-55361437114LOB family transfactor Ramosa2.1
5ly0_B4e-55361437114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.822900.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154639180.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In embryo sac, detected as early as the one-nucleus stage. In older embryo sacs, highest expression in antipodal cells. {ECO:0000269|PubMed:17209126}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. Found on the adaxial side of organs. {ECO:0000269|PubMed:17209126}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640070.11e-148LOB domain-containing protein 6
RefseqXP_015640071.11e-148LOB domain-containing protein 6
RefseqXP_025881387.11e-148LOB domain-containing protein 6
SwissprotQ32SG31e-109LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA2Y4Q20.0A2Y4Q2_ORYSI; Uncharacterized protein
STRINGORUFI05G17830.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.46e-54LBD family protein