PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017917-PA
Common NameOsI_20220
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 594aa    MW: 65547.7 Da    PI: 8.1495
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017917-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-1756102148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEde+l +av  + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  BGIOSGA017917-PA  56 KGGWTPEEDEKLRKAVDIYNGKNWKKIAESFS-DRTEVQCLHRWQKVL 102
                       688*****************************.************986 PP
2Myb_DNA-binding59.29.4e-19108154148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++rw+++l
  BGIOSGA017917-PA 108 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 154
                       79******************************.*************97 PP
3Myb_DNA-binding51.32.7e-16160203146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       + +WT eE+  l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++
  BGIOSGA017917-PA 160 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 203
                       579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.29451102IPR017930Myb domain
SMARTSM007175.8E-1555104IPR001005SANT/Myb domain
PfamPF002493.0E-1556102IPR001005SANT/Myb domain
SuperFamilySSF466893.95E-1657112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2258110IPR009057Homeodomain-like
CDDcd001675.02E-1459102No hitNo description
PROSITE profilePS5129430.661103158IPR017930Myb domain
SuperFamilySSF466892.1E-31105201IPR009057Homeodomain-like
SMARTSM007174.1E-17107156IPR001005SANT/Myb domain
PfamPF002496.8E-17108154IPR001005SANT/Myb domain
CDDcd001671.17E-15110154No hitNo description
Gene3DG3DSA:1.10.10.601.5E-25111157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-22158209IPR009057Homeodomain-like
SMARTSM007171.3E-14159207IPR001005SANT/Myb domain
PROSITE profilePS5129421.856159209IPR017930Myb domain
PfamPF002497.1E-15160203IPR001005SANT/Myb domain
CDDcd001671.06E-11162205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MPAVKVEEEE EEERNPVASS PSVSEGSAHA AALASPTAAD SIFGRRRKSG PVRRAKGGWT  60
PEEDEKLRKA VDIYNGKNWK KIAESFSDRT EVQCLHRWQK VLDPELIKGP WTQEEDDVII  120
NMVKKHGPKK WSVIARSLNG RIGKQCRERW HNHLDPQIRK EAWTVEEERV LARAHCMYGN  180
KWAEIAKLLP GRTDNSIKNH WNSSLRKKID DYNTRDILPV HPPVVGDGLK QLPKRPPADN  240
HFDLNKEPII CSRDRLGVVH SDPTSHQRAS NLKDFKGCAD YLSLGQPVTS CEASAADDSA  300
FDLATQGMRM DSVHDKGTGN NFVCGKVQGI NFLGDKGLKI NQISDKMGCS RQAKREGEAA  360
INGGGSSLQS EAHSVGSLCY QIPKMEDIAP AQSPVFTANY VPEHSRNVMH SPNGYTTPPT  420
HGKGSDQLSV ESILRSAAEK FHGTPSILRR RKRDKPTPAE DNDLKIGRLS SDDFHTPIGK  480
CTTDSPQSFK TAALLSLGPM DEQGSLDVSP PYRLRSKRLA VLKTVQNHLD FSSDEMSICD  540
TTMKSACGNS DCANASSGVS SIQGKKLDEH MIGLETLTMN FAHTTKLDAT QPNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-69552095159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-69552095159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448455RRRKRDKP
2449454RRKRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.547840.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154642960.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067560.0AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637435.10.0transcription factor MYB3R-2-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA2Y5F20.0A2Y5F2_ORYSI; Uncharacterized protein
STRINGORUFI05G20390.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-102myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]