PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA017828-PA

Common Name

OsI_20411

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

G2-like

Protein Properties

Length: 392aa MW: 43709.7 Da PI: 6.8859

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA017828-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.5e-34	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl BGIOSGA017828-PA 25 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 79 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.387	22	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-32	23	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-17	24	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-23	25	80	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-10	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-22	126	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MERHLFLHGG NTQGDSGLVL STDAKPRLKW TPELHQRFVD AVNQLGGAEK ATPKTVMRLM 60 GIPGLTLYHL KSHLQKYRLS KNLQGQANVG TTKNALGCTG VADRIPGTSA LAMASASAIP 120 QAEKTIQIGE ALQMQIEVQR QLNEQLEVQR HLQLRIEAQG KYLQAVLEQA QETLGKQNLG 180 PASLEDAKIK ISELVSQVSN ECLSNAVTEI RESSSIHRLE PRQIQFVESS ANNCLTAAEG 240 FKEHRLQNHG VLKAYDDSTL FCRKQSQDQE SQYSLNRSLS ERRMGHLYSG KQYHKSEGSD 300 SDTEVLHEYI TPQKNGGGST TSSTSGSKEI NVEKLYLDEP SCKRQTVDYQ RESKLLDFDQ 360 QSSGKNLDLN THNIDDNDQG YRHFDLNGFS WS

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MERHLFLHGG NTQGDSGLVL STDAKPRLKW TPELHQRFVD AVNQLGGAEK ATPKTVMRLM  60
GIPGLTLYHL KSHLQKYRLS KNLQGQANVG TTKNALGCTG VADRIPGTSA LAMASASAIP  120
QAEKTIQIGE ALQMQIEVQR QLNEQLEVQR HLQLRIEAQG KYLQAVLEQA QETLGKQNLG  180
PASLEDAKIK ISELVSQVSN ECLSNAVTEI RESSSIHRLE PRQIQFVESS ANNCLTAAEG  240
FKEHRLQNHG VLKAYDDSTL FCRKQSQDQE SQYSLNRSLS ERRMGHLYSG KQYHKSEGSD  300
SDTEVLHEYI TPQKNGGGST TSSTSGSKEI NVEKLYLDEP SCKRQTVDYQ RESKLLDFDQ  360
QSSGKNLDLN THNIDDNDQG YRHFDLNGFS WS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	24	81	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	24	81	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-21	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-21	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-21	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-21	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	24	81	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	24	81	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	24	81	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	24	81	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	24	81	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	24	81	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.70419	0.0	leaf

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116010727	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241362	0.0	AK241362.1 Oryza sativa Japonica Group cDNA, clone: J065151H17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640413.1	0.0	myb-related protein 2 isoform X1
Refseq	XP_015640414.1	0.0	myb-related protein 2 isoform X1
Refseq	XP_015640415.1	0.0	myb-related protein 2 isoform X1
TrEMBL	A2Y5Y8	0.0	A2Y5Y8_ORYSI; Uncharacterized protein
TrEMBL	Q0DH73	0.0	Q0DH73_ORYSJ; Os05g0488600 protein
STRING	OS05T0488600-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	4e-96	myb-related protein 1