PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA017601-PA

Common Name

OsI_20906

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 289aa MW: 30551.3 Da PI: 6.493

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA017601-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.4e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l +v+ +G g +W + +++ g++R++k+c++rw++yl BGIOSGA017601-PA 14 RGPWSPEEDEQLRSYVQSHGIGgNWIALPQKAGLNRCGKSCRLRWLNYL 62 89****************999**********************97 PP
2	Myb_DNA-binding	37.7	4.9e-12	71	111	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T++Ed ++ + + G++ W+ Ia++++ gRt++++k++w++ BGIOSGA017601-PA 71 YTEQEDHIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111 69***************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.942	9	66	IPR017930	Myb domain
SuperFamily	SSF46689	9.8E-28	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	2.06E-9	16	62	No hit	No description
SMART	SM00717	3.8E-10	67	115	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	14.21	67	117	IPR017930	Myb domain
Pfam	PF00249	8.1E-11	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-22	70	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGRAPCCDKA SVKRGPWSPE EDEQLRSYVQ SHGIGGNWIA LPQKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG YTEQEDHIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMGA 120 VQPRAAASAP SQCTSSAMAP ALSPASSSVT SSSGDACFAA AATTTTTMYP PPTTPPQQQF 180 IRFDAPPAAA AAASPTDLAP VPPPATVTAD GDGGWASDAL SLDDVFLGEL TAGEPLFPYA 240 ELFSGFAGAA PDSKATLELS ACYFPNMAEM WAASDHAYAK PQGLCNTLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-25	14	117	7	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.55636	0.0	root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32993661	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108452	0.0	AK108452.1 Oryza sativa Japonica Group cDNA clone:002-143-C10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637875.1	0.0	transcription factor RAX2
TrEMBL	A0A0E0PQX3	0.0	A0A0E0PQX3_ORYRU; Uncharacterized protein
TrEMBL	A2Y791	0.0	A2Y791_ORYSI; Uncharacterized protein
TrEMBL	Q6I634	0.0	Q6I634_ORYSJ; Os05g0553400 protein
STRING	ORUFI05G26880.1	0.0	(Oryza rufipogon)
STRING	OS05T0553400-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	4e-70	myb domain protein 84