PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017525-PA
Common NameOsI_21068
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 272aa    MW: 29579.2 Da    PI: 10.119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017525-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-1997147256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ kl+ge
  BGIOSGA017525-PA  97 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 147
                       59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-2996154No hitNo description
PROSITE profilePS5103223.16997154IPR001471AP2/ERF domain
SMARTSM003802.1E-3397160IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2297154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-3097154IPR001471AP2/ERF domain
PRINTSPR003672.4E-1298109IPR001471AP2/ERF domain
PfamPF008471.8E-1398147IPR001471AP2/ERF domain
PRINTSPR003672.4E-12136156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDASLRTLPP ASFPGEVRSA VSSLLLSPGG SALDTVFSHL PPPVTIPPLG SSVYYRQSEL  60
LRHFAASQAA QAQSATAAAS SSSAAAAGLD DGAPRKLYRG VRQRQWGKWV AEIRLPQNRV  120
RVWLGTYDSP ETAAHAYDRA AFKLRGEYAR LNFPGVMDGR DCPDNLRQLR DAVDAKIQAI  180
RVRMARKRAR ARRQREESKK SQRAEDAKAA TPSRPVASER AASETTTTTT TSSSYGSPDG  240
VLSMSAASVD GDCPLERMPS FDPELIWEML NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1896154463ATERF1
3gcc_A2e-1896154463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190ARKRARA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.613470.0flower| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638431.11e-152ethylene-responsive transcription factor ERF061
SwissprotQ9C7W22e-41ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0E0A3260.0A0A0E0A326_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HIS00.0A0A0E0HIS0_ORYNI; Uncharacterized protein
TrEMBLA2Y7P90.0A2Y7P9_ORYSI; Uncharacterized protein
STRINGOGLUM05G28130.10.0(Oryza glumipatula)
STRINGONIVA05G28560.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-32ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]