PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA017399-PA | ||||||||
Common Name | OsI_18029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 479aa MW: 52179.1 Da PI: 8.7865 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.6 | 2.4e-06 | 247 | 269 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F r+++L+ H++ H BGIOSGA017399-PA 247 SCPDCGEIFVRPDSLHLHQSIrH 269 8******************9888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.871 | 246 | 274 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 246 | 269 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.22E-20 | 271 | 478 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 5.6E-13 | 273 | 478 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 479 aa Download sequence Send to blast |
MVEPGRARET KVTASASSSA GSDAAVMKKK KKKKKLVVAS RKVDEKDKKQ VDYKCSRSSG 60 RDECCKVESR HQQCTEPESP SYRLALRSLF SCRNSSSSSH AGHHHHRAAD GKKLGCNSSS 120 ICKVKQDNPM QQHMRRAEDE LKVKDKPPVA EPYCKRRASV SACNISSERS VKKSVKQQQQ 180 EASSSLQSSA SISASSCSST AGGGGSFRGM QQLSLRRLSG CYECHMVVDP ISGVFRDNSS 240 MRATICSCPD CGEIFVRPDS LHLHQSIRHA VSELGAEDTS RNIISIIFQS SWLKKQSPVC 300 AIDRILKVHN AARTLARFDD YRAAVKAKAM AHRHPRCTAD GNELLRFHCA TLSCDLGLHG 360 ATHLCDHLSC AACAIIRHGF RPPAPGAGIR TMATSGRAHD AVVSSGSEGD RRAMLVCRVI 420 AGRVRREEAA AAAAEEEEEE EEEYDSVAGT TPGLYSNLDE LDVFNPTAIL PCFVVVYRA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 28 | 34 | KKKKKKK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.80857 | 0.0 | panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32985065 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK099856 | 0.0 | AK099856.1 Oryza sativa Japonica Group cDNA clone:J013110K19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634280.1 | 0.0 | uncharacterized protein LOC4337494 | ||||
TrEMBL | A2XZ89 | 0.0 | A2XZ89_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q00RM4 | 0.0 | Q00RM4_ORYSA; H0814G11.16 protein | ||||
STRING | ONIVA04G29800.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75710.1 | 4e-87 | C2H2-like zinc finger protein |