PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017208-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 355aa    MW: 40422.7 Da    PI: 5.7986
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017208-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.13.5e-1263103242
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                       +++k+ rr+++NReAAr+sR+RKka+i++Le+   +L +  
  BGIOSGA017208-PA  63 PPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLKLAQLE 103
                       5799***************************8544443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-1162126IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.93364108IPR004827Basic-leucine zipper domain
PfamPF001703.3E-964104IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-766112No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-868116No hitNo description
PROSITE patternPS0003606984IPR004827Basic-leucine zipper domain
PfamPF141443.3E-26154230IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGAYDRPPPV GMWSHEQFKV DNGQATSAST IMEAEMKFEN RLEEIPQVVL EEGRNVDQEA  60
SKPPDKVLRR LAQNREAARK SRLRKKAYIQ QLETSRLKLA QLEQELQRAR QQAVYANGSL  120
REPNLGFTGP IDPGALGFEI KYSHWVDEQN RNTGELRNAL LQGQTTDQDL ELKLLVEAGL  180
DNYNRLFEMK EEAANSDVFY IMSGMWKTPT ERFFLWIGGF RPSEVLKNLR PQLEPLTDKQ  240
VVEVGGLQQT SMQVEDALSQ GMDKLKQTIA DSLTAADPFD SPEAYMVHMA NAVEQLRSLV  300
QFVTQADHLR QQTLQEMHRI LTTRQAARGL LALGDYFQRF RALSSLWAAR PRDSG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.271780.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329769240.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737150.0AK073715.1 Oryza sativa Japonica Group cDNA clone:J033059P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880678.10.0transcription factor TGAL6 isoform X3
SwissprotA0A0P0WFC80.0TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBLA0A0D3G0490.0A0A0D3G049_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZRD80.0A0A0D9ZRD8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PEM40.0A0A0E0PEM4_ORYRU; Uncharacterized protein
TrEMBLI1PPQ20.0I1PPQ2_ORYGL; Uncharacterized protein
STRINGORGLA04G0217100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-118TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okada A, et al.
    OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.
    J. Biol. Chem., 2009. 284(39): p. 26510-8
    [PMID:19635799]
  3. Okada K
    The biosynthesis of isoprenoids and the mechanisms regulating it in plants.
    Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25
    [PMID:21737944]
  4. Yamane H
    Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.
    Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8
    [PMID:23748776]
  5. Miyamoto K, et al.
    Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.
    PLoS ONE, 2014. 9(8): p. e105823
    [PMID:25157897]
  6. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]