PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016934-PA
Common NameOsI_17010
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 645aa    MW: 66796.2 Da    PI: 8.6177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016934-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05129151123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F r  nL+ H r H
  BGIOSGA016934-PA 129 FVCEVCNKGFQREQNLQLHRRGH 151
                       89*******************88 PP
2zf-C2H211.50.00096206228123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H + +
  BGIOSGA016934-PA 206 WKCDKCSKRYAVQSDWKAHSKIC 228
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.1E-6128151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.95E-7128151No hitNo description
PfamPF121714.3E-5129151IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0041129151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094129151IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4194227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.95E-7201226No hitNo description
SMARTSM00355140206226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQHQHQ QQQLAASLTG VATAAPTAAS  60
SQGAPPAAPP AKKKRNLPGN PSNQPNASFK ALYCHLKERE LIQVKNTETD PDAEVIALSP  120
KTLLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPAQAQRRRV YLCPEPTCVH  180
HDPARALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKICGT REYRCDCGTL  240
FSRRDSFITH RAFCDALAQE SSRLPPTSLS SLTSHLYGAS NAGNMALSLS QVGSHLTTSL  300
QDGGGHHHHP SPELLRLGGA GGGGGAGGGS SIAARLDHLL SPSGASAFRP PQPAFFLNAA  360
AAAAATGQDF GDDAGNGQHS FLQAKPFHGL MQLPDLQGNG AGGPGAPGPN LFNLGFFANN  420
GNSSGSSHEH ASQGLMSNDQ FSGGAGGGGG SDASAAGIFG GNFVGGDHVS PAGLYNDQAA  480
MLPQMSATAL LQKAAQMGAT SSANGPGSMF RGFVGSSPHM RPAAQHMDQS DAHLNDLMNS  540
LAGGGVNAAA MFGGTNGGGV PGAGMFDPRL CDIEHEVKFS QGGGGGGGAG AGTGDGTRDF  600
LGVGGGGIVH GMSTPRGDHH QSSSDMSSLE AEMKSASSFN GRRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33202268369Zinc finger protein JACKDAW
5b3h_F1e-33202268369Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.525650.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379903460.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207230.0AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
TrEMBLB8AT330.0B8AT33_ORYSI; Uncharacterized protein
STRINGONIVA04G20460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.19e-99indeterminate(ID)-domain 12