PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016874-PA
Common NameOsI_16877
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 328aa    MW: 34846.6 Da    PI: 5.2234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016874-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20138189256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  BGIOSGA016874-PA 138 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 189
                       8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-32137197IPR001471AP2/ERF domain
PROSITE profilePS5103224.144138196IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22138197IPR016177DNA-binding domain
PfamPF008471.6E-14138188IPR001471AP2/ERF domain
SMARTSM003805.5E-37138202IPR001471AP2/ERF domain
CDDcd000181.77E-29138197No hitNo description
PRINTSPR003672.0E-13139150IPR001471AP2/ERF domain
PRINTSPR003672.0E-13178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDFHHGDADD FALEFIREHL LGVDGATATA TEPADLEVVE PAAAYPPMSW QEQRQQEQHG  60
CHVELTDEHL ESAPAAEAAA AFRTAPAQPA AEVMIKFGGE PSPVRPSSSL TISLPPSSFG  120
SWASAAAPAA AAVEDFRKYR GVRQRPWGKF AAEIRDPKRR GSRVWLGTYD TPVEAARAYD  180
RAAFRMRGAK AILNFPNEVG TRGTELWAPP PPPPAHSAAA STTNKRKRQP SEDPDDGVEV  240
IGVVSKAVKT EAPTSNSSSL SSSLTSRDTT PATSSAGAEH AGAAAESSPA TPSSWSWEQY  300
WEALLGGLPP LSPLSPHPAL GFPQLTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26137201468ATERF1
3gcc_A2e-26137201468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.823520.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329943500.0
GEO334400250.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635116.10.0ethylene-responsive transcription factor ERF105
TrEMBLA0A0E0H3V10.0A0A0E0H3V1_ORYNI; Uncharacterized protein
TrEMBLA2XW510.0A2XW51_ORYSI; Uncharacterized protein
STRINGONIVA04G18910.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-32ethylene responsive element binding factor 5