PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA016861-PA | ||||||||
Common Name | OsI_16838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 209aa MW: 22650.8 Da PI: 10.7441 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.5 | 2e-09 | 24 | 85 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + + BGIOSGA016861-PA 24 CWTPDETLALARAYTARRLAVGRAHLTSADWAAVADAATP---TKTARQCRHKVEKLRRRLRSKR 85 8**********************************98766...57889***********998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-7 | 23 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-4 | 25 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.249 | 25 | 78 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MASSSPTNAA AAAAAAARRV PPPCWTPDET LALARAYTAR RLAVGRAHLT SADWAAVADA 60 ATPTKTARQC RHKVEKLRRR LRSKRRRPCP LLDAIDLLDG PSPSASPSQS PSPPPPASPP 120 PLPPAPSSPP PKKRRLPDGD ADADAEDDGE SDVVKALRAI GEGFLRAEQR RMEAARKTQQ 180 MRMEMALRHL DSQRRLMEAL VDRIIDSLE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 81 | KLRRRLR |
2 | 76 | 82 | LRRRLRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4865 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297603110 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653630.1 | 5e-84 | PREDICTED: leiomodin-2-like, partial | ||||
TrEMBL | A2XW19 | 1e-141 | A2XW19_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G18650.1 | 1e-141 | (Oryza nivara) | ||||
STRING | ORGLA04G0174800.1 | 1e-141 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13911 | 20 | 24 |