PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016834-PA
Common NameOsI_16789
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 511aa    MW: 57474.5 Da    PI: 10.657
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016834-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.78.8e-1082169397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       fqr ws +De+++L ++   ++++gk       +++  ++++++ k  + + l +K+r + ++  ++ k+         +++hd+  ++ls+ 
  BGIOSGA016834-PA  82 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRN 166
                       9************************65..56789999999999865278899********9999998888......556899*********** PP

            DUF573  95 iWg 97 
                       +W 
  BGIOSGA016834-PA 167 VWV 169
                       **6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.1E-1382168IPR007592Protein of unknown function DUF573
PfamPF030171.9E-17418472IPR004264Transposase, Tnp1/En/Spm-like
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MAPTLPVVPA HGEDKKKKKK KKKKPSQEEE ALPLPLPLPP PDRKRKKASE PVNSPERAKK  60
KKKTATPHEP PSAKQQKRPL PFQRTWSPND EVLILEAMAA HRQEHGKVPT AAELFPVLNG  120
RLDRKRLTYK KLADKLRTFM RRHGRDAKNG PPTQAHDRRL YDLSRNVWVS QTQPPNLSAN  180
ANSNIAGGQP NQHDAMPTAG KAFVKMRDSY PNLTQALLLL VGTDLEKALT AIDETKAQAL  240
DLKVSNLKKE LSEAVMESAT IQSTESSKIP CFPSTKLQPE FGAEIEKNFQ LEHLDEMKGA  300
QVKLARMEQE ILELKQNFLA FQSQQMVDSK QQQDKSSAKT LQKEMVIQHK LSCGKTKEVT  360
SKHRHPQKEV QKMMYGQRKI PYGRKRNDAG SQIKRNGELR RVTMHGQKED TNNEGGKEVL  420
LLSTTRPHIP VAKATLQTSS GSKFVGGMPL GSEWYQVFVN DVLKPEAPLL RPPGMKMAEA  480
LKSIIAWPCA QIVKKCKHLL HRFNGVTMVT Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11324DKKKKKKKKKKP
21423KKKKKKKKKK
31523KKKKKKKKK
41723KKKKKKK
54246RKRKK
64462RKKASEPVNSPERAKKKKK
75561ERAKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.533900.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329824090.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723860.0AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610933.10.0uncharacterized protein LOC4346364 isoform X1
TrEMBLB8ASP00.0B8ASP0_ORYSI; Uncharacterized protein
STRINGOBART09G00030.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.17e-11DNA-binding storekeeper protein-related transcriptional regulator