PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA016822-PA | ||||||||
Common Name | OsI_16767 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 27297.4 Da PI: 5.3721 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+llvd+v+ G+g+W++ ++ g++R++k+c++rw +yl BGIOSGA016822-PA 14 KGPWTPDEDKLLVDYVQANGSGNWRLLPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++ ++++++ G++ W+ Ia+ ++ gRt++++k++w++ BGIOSGA016822-PA 67 RGPFTPEEHKSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.39 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.65E-31 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.94E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 18.627 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.12E-11 | 69 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 69 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRTPCCDSK VLKKGPWTPD EDKLLVDYVQ ANGSGNWRLL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGPF TPEEHKSILQ LHAIVGNKWS MIAAQLPGRT DNEIKNYWNT NAEARLSLLS 120 GATSVATASV AASSSSSSTA AAGGAEAPPD IYLRLWNSEV GDSFRKSARS AAREDQEPAN 180 ASDEAAPVSA TFARPGDDSS AASNVTAAAA ADEYQVFLDL AAEDFELFHG RHGGFPLFPA 240 VDMLGETSLY TAFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL663006 | 0.0 | AL663006.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636233.1 | 1e-149 | transcription factor MYB41 | ||||
Swissprot | Q9M2D9 | 2e-66 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A2XVU9 | 0.0 | A2XVU9_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA04G0169000.1 | 1e-148 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 3e-62 | myb domain protein 17 |