PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016791-PA
Common NameOsI_16711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 206aa    MW: 21968.9 Da    PI: 10.9191
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016791-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.8e-3451168489
               TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesssssas.....nss 86 
                       +++  +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a  +c    +      s+s        
  BGIOSGA016791-PA  51 ATQGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCssapS----TASSSfllgkR-- 137
                       556679********************************************************88888544432221....22222222221.. PP

               TCP  87 sg.............................k 89 
                        +                             +
  BGIOSGA016791-PA 138 -PrqedheaptfwealqqqprpavsswgalvS 168
                       .0333443344444444444443333333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3054151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00955109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MASRDAATFQ VYRPMAMPTP AALPPSSQQI TMPFTAAPVD AVLPAPRKAA ATQGGKDRHS  60
KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFS  120
CSSAPSTASS SFLLGKRPRQ EDHEAPTFWE ALQQQPRPAV SSWGALVSPS QEAQAYASSV  180
AQVHHLNLLS ALSGAATRRP AQEESR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.520970.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166319150.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552300.0CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635777.11e-146transcription factor TCP21
TrEMBLA0A0D9ZNA41e-146A0A0D9ZNA4_9ORYZ; Uncharacterized protein
TrEMBLA2XVQ01e-146A2XVQ0_ORYSI; Uncharacterized protein
TrEMBLI1PN681e-146I1PN68_ORYGL; Uncharacterized protein
TrEMBLQ01HP91e-146Q01HP9_ORYSA; OSIGBa0115K01-H0319F09.3 protein
STRINGOGLUM04G19130.11e-147(Oryza glumipatula)
STRINGORGLA04G0163700.11e-147(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.11e-37TCP family protein