PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016767-PA
Common NameARF10, OsI_016103, OSIGBa0145G11.4
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 699aa    MW: 75737.3 Da    PI: 6.6117
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016767-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.3e-24125226199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++       ++++ +   +  +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+  +
  BGIOSGA016767-PA 125 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysSEPPVQ--SVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM--R 213
                       89*********************999****987656666..5************************************************..5 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++++ +v+++r+
  BGIOSGA016767-PA 214 DEGGNIHVGLRRA 226
                       699*******996 PP
2Auxin_resp118.64.9e-39280363183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa++a+t+++Fev+Y+Prast+eF+v+++ v++a+ v++++GmRfkmafetedss++++ +Gtv+gv+++dpvrWp+S+Wr+L+
  BGIOSGA016767-PA 280 AATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQASDPVRWPQSPWRLLQ 363
                       78999*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-36115228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-29118226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.94E-19124225No hitNo description
PfamPF023625.5E-22125226IPR003340B3 DNA binding domain
SMARTSM010193.9E-21125227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435125227IPR003340B3 DNA binding domain
PfamPF065072.1E-33280363IPR010525Auxin response factor
PROSITE profilePS5174518.88613693IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS  60
ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSRP  120
RPTSFAKTLT QSDANNGGGF SVPRFCAETI FPELDYSSEP PVQSVCAKDV HGVEWTFRHI  180
YRGTPRRHLL TTGWSPFVNK KQLTAGDSIV FMRDEGGNIH VGLRRAKRGF CSIGGDDESL  240
SSIPGWDQYR GLMRRNATAT ATGGRTPPKG KVPPENVLTA ATRATTGQPF EVLYYPRAST  300
PEFCVRAAAV RTAMAVQWCP GMRFKMAFET EDSSRISWFM GTVAGVQASD PVRWPQSPWR  360
LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRNPPYA ELPLEGQIFT  420
GPVFPPNPMA HDHHHHHGFP FLPFPDSSAQ PAGIQGARHA QFASPFPEFH IGNLQPNLML  480
YAGIRLPPAD RAAPAPRPPR IIISTDLTIG SPGKPDDAAC SPSSGGKKID DTKPRGFLLF  540
GQAILTEEQI KNGNSDGRPA SPNWDAEKAP NTSEGSDSGV TQGSPTKNTT PSWSLPYFGG  600
NNISRASEYE LNPGQCKVFV ESETVGRSLD LSALSSFEEL YACLSDMFSI GSDELRSHLV  660
YRSPAGEVKH AGDEPFCAFV KSARKLRILT DAGSDNLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-81138433388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.83740.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329860040.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629580.0AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence.
GenBankAL7316290.0AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633845.10.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLB8AS270.0B8AS27_ORYSI; Auxin response factor
STRINGOGLUM01G18360.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
    Gene, 2007. 394(1-2): p. 13-24
    [PMID:17408882]