PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA016694-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 242aa MW: 25109.8 Da PI: 8.0929 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.6 | 5.1e-08 | 20 | 56 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ ++ + ++lfC+ + +lC+ C H g H BGIOSGA016694-PA 20 RACDACGGEAARLFCRADAAFLCAGCDARAH-GpgsrH 56 68*************************9999.545556 PP | |||||||
2 | zf-B_box | 23.6 | 1.1e-07 | 59 | 103 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p BGIOSGA016694-PA 59 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 103 679*****************************6688888898877 PP | |||||||
3 | CCT | 65.1 | 2.1e-22 | 148 | 191 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY eKrk+R+Fe++irY+sRKa+Ae+RpR+KGrF+k++ BGIOSGA016694-PA 148 REARLMRYXEKRKSRRFERTIRYASRKAYAETRPRIKGRFAKRT 191 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.5E-9 | 17 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.424 | 17 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.06E-8 | 20 | 61 | No hit | No description |
Pfam | PF00643 | 3.0E-6 | 20 | 57 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.424 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.9E-6 | 59 | 104 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-9 | 62 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.1E-17 | 148 | 190 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.251 | 148 | 190 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MEGDDKSAVV GGAYWGLAAR ACDACGGEAA RLFCRADAAF LCAGCDARAH GPGSRHARVW 60 LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGA LADAPKPGSG 120 IILGGGGGAG RGGGRRRSDA GGEQGREREA RLMRYXEKRK SRRFERTIRY ASRKAYAETR 180 PRIKGRFAKR TKGGAGADAD ADADADGEDE EMYSSGAAAV AALMAPGGSD ADYGVDGVVP 240 TF |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.46598 | 0.0 | flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37990647 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL606627 | 0.0 | AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855209 | 0.0 | CR855209.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092E01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976103.1 | 5e-69 | zinc finger protein CONSTANS-LIKE 3 | ||||
Swissprot | Q9FHH8 | 1e-41 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9SK53 | 7e-42 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | K3Y8Q0 | 1e-67 | K3Y8Q0_SETIT; Uncharacterized protein | ||||
STRING | Si010592m | 2e-68 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24790.2 | 2e-27 | CONSTANS-like 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|