PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016586-PA
Common NameOsI_16264
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 663aa    MW: 68683.2 Da    PI: 8.4974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016586-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074198219223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +Cp Cgk+F +   +  H+r+H
  BGIOSGA016586-PA 198 TCPECGKVFMSDKAMYGHLRSH 219
                       8*******************99 PP
2zf-C2H213.10.00029472494123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+k+Fs++  L  H   H
  BGIOSGA016586-PA 472 YECSECHKTFSTHQALGGHVAAH 494
                       99***********9998887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0066197219IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887197224IPR007087Zinc finger, C2H2
SuperFamilySSF576673.82E-8198219No hitNo description
PfamPF139121.9E-5199219IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SuperFamilySSF576673.82E-8467494No hitNo description
SMARTSM003550.02472494IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-7472496IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.822472499IPR007087Zinc finger, C2H2
PROSITE patternPS000280474494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MAASGQVWCL LPLRVALSPP LPPWPPATMV MPPLLAAAAA MAASGQVRRL LSLRAALPSP  60
WPLATMAPSS SRHRHHGCRC PGFQYAFVRE KAAGDHLSLG YMQHGVRAFT LILLDNNNKK  120
KKGDLSNNLD LSSSPLLMDS RGQAYYHRAA AAAAAVAAGD ATDGEEPAAA ELAPKAVRSK  180
KKLAVEAQGG AAVRDDLTCP ECGKVFMSDK AMYGHLRSHP LRKHKGAARL AAVAAAAADD  240
ASVAAGVKPR PWKVPRTKEE AELGDDRHPG RSPVTGKRGR PASSASSSGS APAPAPPASS  300
RLQLVITEEE EAAMTLLDIA SGCSLDHQPT QPAHVADAAL LAPASDQMPS VDVEQGVLAV  360
AEHRTWEAEK PALVEHVFGI VKEHVAAVAA DAEPQSPEAK TPVKLGPVTD QAVPVLGDKN  420
DDGHADMPVS PGGGTTKKPL KRRLQDVETK HPTAPPPPPV KRIPSPASKR KYECSECHKT  480
FSTHQALGGH VAAHKRQKKS CAEQQQEAVA AAAQVARHNF LAHQRPAGVV VAVDATALGG  540
HMRKHFLEAK EQEQLLAIAI ANANANANAN AAPEPPPMMA NAAPVPPPSM ANGAGPVPPP  600
IAVAPPPAPP IAGAAPPPPM ANGAAAAAPP GGNPAPPAGP QPGVNMFDLN ELPNEDAGEN  660
QQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436443KKPLKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064410.0AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880741.10.0zinc finger protein 628-like
TrEMBLB8AV620.0B8AV62_ORYSI; Uncharacterized protein
STRINGORGLA04G0126900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1819399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-06C2H2-like zinc finger protein