PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016467-PA
Common NameOsI_16025
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 660aa    MW: 73242.7 Da    PI: 5.5359
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016467-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.7e-24122222198
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + 
  BGIOSGA016467-PA 122 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RG 211
                       99*****************************7556666.59************************************************..44 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       +++el+v+v+r
  BGIOSGA016467-PA 212 ESGELRVGVRR 222
                       9999*****97 PP
2Auxin_resp101.79.8e-34248333183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                       a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe+++++err+sGt++g+     ++ + W +S W+sLk
  BGIOSGA016467-PA 248 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQNLSVGMRFKMRFEGDEAPERRFSGTIIGIGSvpaMSKSPWADSDWKSLK 333
                       789*************************************************************987522267889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-45106251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-41119237IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-21120222No hitNo description
SMARTSM010191.1E-20122224IPR003340B3 DNA binding domain
PfamPF023621.7E-21122222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533122224IPR003340B3 DNA binding domain
PfamPF065076.3E-32248333IPR010525Auxin response factor
PfamPF023094.5E-6516570IPR033389AUX/IAA domain
SuperFamilySSF542771.37E-11532612No hitNo description
PROSITE profilePS5174526.202534626IPR000270PB1 domain
PfamPF023091.2E-7582625IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MEMAANPGGS GTCSDALFRE LWHACAGPLV TVPKRGERVY YFPQGHMEQL EASTNQQLDQ  60
YLPMFNLPSK ILCSVVNVEL RAEADSDEVY AQIMLQPEAD QSELTSLDPE LQDLEKCTAH  120
SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMSQNPPCQ ELVAKDLHGT EWHFRHIFRG  180
QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GESGELRVGV RRLMRQVNNM PSSVISSHSM  240
HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKKQNLSVGM RFKMRFEGDE  300
APERRFSGTI IGIGSVPAMS KSPWADSDWK SLKVQWDEPS AIVCPDRVSP WELEPLDASN  360
PQPPQPPLRN KRARPPASPS VVAELPPSFG LWKPPSEAAQ TLSFSEPQRA REIFPSIPAS  420
IFSASSHVEF NSKNEPSILS NQFYWSMRDS KTDSFSASTN KARVERKQEP TTMGCRLFGI  480
EISSAVEEAL PAATVSGVGY DQTVLSVDVD SDQISQPSNG NKSDAPGTSS ERSPLSPKVI  540
MQGMAVGRAV DLTKLNGYGD LRSKLEEMFD IQGDLCPTLK RWQVVYTDDE DDMMLVGDDP  600
WDEFCSMVKR IYIYSYEEAK LLAPKSKLPV IGDTIKLSSM NSSHESVDLD NHASVTNRDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.043588357Auxin response factor 1
4ldw_A0.043588357Auxin response factor 1
4ldw_B0.043588357Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.170700.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329749430.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0649250.0AK064925.1 Oryza sativa Japonica Group cDNA clone:J013000N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636800.10.0auxin response factor 9 isoform X3
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLB8AUB50.0B8AUB5_ORYSI; Auxin response factor
STRINGOS04T0442000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]