PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016339-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 479aa    MW: 50717.8 Da    PI: 8.6916
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016339-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.19.9e-1891180186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +Wt+  +  L++ ++++ e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kryk + ++  +  + ++s++p+f+++e
  BGIOSGA016339-PA  91 EWTDGAISSLLDSYTDRFEQLNRGNLRGRDWEDVAAAVsdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRLAGSGASAVSHWPWFKKME 180
                       5*************************************6655334446899***************888887777677888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-2089182No hitNo description
Gene3DG3DSA:3.40.1160.103.8E-72235472IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.915237473IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.14E-55237472IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.32E-115240473No hitNo description
PfamPF006962.4E-19240452IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MASCDDDFGL LGDGPVPEEE AAAAAASSQA APPPPQQQAQ AFCFGDAASV AGAGAGRRRW  60
RRRGXKGRGG GGVGGGGVAA GSSEYRKDRE EWTDGAISSL LDSYTDRFEQ LNRGNLRGRD  120
WEDVAAAVSD GQGKSSGGKS VEQCKNKIDN LKKRYKVECQ RLAGSGASAV SHWPWFKKME  180
QIVGNSSSPA SSKALVASDD DNKPRQPQQH SSKRHAPSGS STPTFGGSSR LAPPSNPKWK  240
RVLLKIGGTA LAGAPPQNVD PKVIMLIARE VQVACRHGVE VSIVVGGRNI FCGDTWVSAT  300
GTDRASTYSI GMMASVMNAV LLQASLEKIG VETRVQTALM MQEVAEPYIR RRAIRHLEKG  360
RVVIFAGIGA GIGNPLFTTD TAAALRASEI NADVVLKGTA GDDDYGCPPR GNNNPPFEHI  420
SFRELAARGF SRMDMTAITC CQENNIPVVI FNMLEPGNIS KAICGDQVGT LVDQSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A2e-612374725238uridylate kinase
1z9d_B2e-612374725238uridylate kinase
1z9d_C2e-612374725238uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.878050.0callus| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154582250.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087570.0AK108757.1 Oryza sativa Japonica Group cDNA clone:002-150-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637195.10.0uncharacterized protein LOC4335753
SwissprotQ7VD611e-79PYRH_PROMA; Uridylate kinase
TrEMBLA0A0E0KQ690.0A0A0E0KQ69_ORYPU; Uncharacterized protein
STRINGOPUNC04G09570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-155Trihelix family protein