PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA016336-PA | ||||||||
Common Name | OsI_15773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 131aa MW: 15063.1 Da PI: 8.3251 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 45.8 | 1.8e-14 | 45 | 97 | 45 | 97 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + ++lp +++ d++sslvyeA+ r+rdPvy +v+ i+ lq+q++ql+ +la BGIOSGA016336-PA 45 IRQELPVQQQGDTVSSLVYEANDRMRDPVYDCVRAISFLQNQVSQLQMQLAIG 97 5689999******************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.9E-12 | 47 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MLIKDYLYHV HSDFIHGKAR LYLQQCGRRD QRVKLPTCAG GSEEIRQELP VQQQGDTVSS 60 LVYEANDRMR DPVYDCVRAI SFLQNQVSQL QMQLAIGQGE NLCIQMQHRR FAAQYRVNRP 120 NLAISQDPLG S |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR855110 | 1e-101 | CR855110.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0502B11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624534.1 | 2e-29 | LOB domain-containing protein 12 | ||||
Refseq | XP_015638859.1 | 2e-29 | LOB domain-containing protein 12 | ||||
Refseq | XP_025806795.1 | 2e-29 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 6e-25 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A2XT36 | 6e-92 | A2XT36_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM04G11190.1 | 7e-58 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP30777 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 2e-27 | LBD family protein |
Publications ? help Back to Top | |||
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