PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA016313-PA | ||||||||
Common Name | OsI_15721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 27877.1 Da PI: 10.2157 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.2e-21 | 67 | 116 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a+++++g BGIOSGA016313-PA 67 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 116 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-33 | 66 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 67 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.711 | 67 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-38 | 67 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 67 | 125 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.75E-31 | 67 | 125 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 68 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MVTALAHVIR AAPDLHLPHH PSSSASAAAH PQQASSFYPT AAAAASSPSD QLAAAAAAAE 60 EQGRRRHYRG VRQRPWGKWA AEIRDPKKAA RVWLGTFDTA EDAAIAYDEA ALRFKGTKAK 120 LNFPERVQGR TDLGFLVTRG IPPAATHGGG YYPSSSPAAG ACPPPRQQQT VVPYPDLMRY 180 AQLLQGGVGG SYMPFGGAAT MSSSTVSSSS APQILDFSTQ QLIRAGPPSP MPSSGSGSAT 240 AAASSTTSAS SPGAWPYGGS ERKKKDSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 66 | 128 | 4 | 67 | ATERF1 |
3gcc_A | 1e-27 | 66 | 128 | 4 | 67 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9523 | 0.0 | callus| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764068 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101501 | 0.0 | AK101501.1 Oryza sativa Japonica Group cDNA clone:J033044C14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636603.1 | 1e-143 | ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A0E0H036 | 0.0 | A0A0E0H036_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XSY7 | 0.0 | A2XSY7_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G08960.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4447 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 1e-22 | related to AP2 6l |