PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA016164-PA | ||||||||
Common Name | OsI_15440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 709aa MW: 80580.7 Da PI: 6.5639 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 6.6e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l BGIOSGA016164-PA 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 80 | 122 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l BGIOSGA016164-PA 80 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 122 7*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-13 | 4 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-16 | 5 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-12 | 8 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.08E-12 | 10 | 53 | No hit | No description |
PROSITE profile | PS51294 | 14.431 | 73 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-10 | 77 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd11659 | 6.53E-27 | 79 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-10 | 80 | 123 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.66E-11 | 80 | 127 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.2E-9 | 81 | 129 | No hit | No description |
Pfam | PF11831 | 3.0E-60 | 425 | 676 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKL 60 CSPHAILLQA YTAFEGLMTE WTREEDEKLL HLAKLMPTQW RTIAPIVGRT PSQCLERYEK 120 LLDAACAKDE NYEPNDDPRK LRPGEIDPNP ESKPARPDPV DMDEDEKEML SEARARLANT 180 RGKKAKRKAR EKQLEEARRL ASLQKRRELK AAGIDTRQRK RKRKGIDYNA EIPFEKRPPP 240 GFYDTVGEDR PLEHVQFPTT IEELEGKRRV DIEAQLRKQD IARNKILQRQ DAPAAIMQAN 300 RLNDPEAVTK RSKLMLPPPQ ISDHELEEIA KMGNAGDPSL VEELGEGSTA TRALLSSYSQ 360 TPRLGMTPLR TPQRTPAGKG DAIMMEAENL ARLRESQTPL LGGDNPELHP SDFSGVTPRK 420 KEMQTPNPMA TPLASPGPGA TPRIGMTPSR DGSSFGLTPK STPFRDELRI NEEVDMQDTA 480 KLELRRQAEL RKSLRSGFAS IPQPKNEYQI VMPPITEEEK EEAEEKIEDM SDRLARERAE 540 EQARQEALLR KRSKVLQRSL PRPPAASIEI LRQTLIKGGE SRSRSTFVPP TSLEQADELI 600 NEELLRLLEH DNAKYPLDEK TQKDKKKGSK RQANGTPSVP EIEDFDEDEL KEANSMLEEE 660 VQYLRVAMGH ESESLEDFVK AHDACQEDLM FFPNNTAMVL PALLEILIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 696 | 3 | 675 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 223 | KRRELKAAGIDTRQRKRKRK |
2 | 218 | 223 | RKRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10202 | 0.0 | callus| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987457 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102248 | 0.0 | AK102248.1 Oryza sativa Japonica Group cDNA clone:J033088F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636290.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | B8ASH5 | 0.0 | B8ASH5_ORYSI; Uncharacterized protein | ||||
STRING | OS04T0348300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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