PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA016105-PA | ||||||||
Common Name | OsI_15307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27547.3 Da PI: 9.5594 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.2 | 1.7e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+ly++ss BGIOSGA016105-PA 9 KRIDNTTNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 67.5 | 4.5e-23 | 110 | 197 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++a+ +q+e++ L+++++nL +++R+llGe++++ ++++Lq L++q+e sl +iR+kK l+ ++ +el+kk + ++++n +L+kkl+ BGIOSGA016105-PA 110 SEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKGSLVQKENSELRKKFNIAHQRNIELHKKLN 197 6789*********************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.062 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-27 | 2 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.80E-36 | 2 | 102 | No hit | No description |
PRINTS | PR00404 | 1.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.2E-21 | 111 | 196 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.765 | 112 | 202 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGKIAIKR IDNTTNRQVT FSKRRGGLMK KARELAILCD ADVGLIVFSC TGRLYDFSSS 60 RVFFDSLDDL KSGALFLKEK EMRSRSCMKS IIERYQEAGE EHCRLLNPMS EAKFWQREVT 120 TLRQQVQNLH HNNRQLLGEE ISNFTVRDLQ LLQNQVEMSL HSIRNKKGSL VQKENSELRK 180 KFNIAHQRNI ELHKKLNSGE STSSEQVTRS SKDPGESSTP RDSRVCIDLE LSQKEVEDE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 4e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 4e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 4e-17 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.54265 | 1e-135 | callus |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32988136 | 1e-135 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedling roots. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK102927 | 1e-133 | AK102927.1 Oryza sativa Japonica Group cDNA clone:J033114E21, full insert sequence. | |||
GenBank | AY177695 | 1e-133 | AY177695.2 Oryza sativa (japonica cultivar-group) transcription factor MADS25 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635120.1 | 1e-145 | MADS-box transcription factor 25 | ||||
Swissprot | Q84NC5 | 1e-146 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | B8AS73 | 1e-175 | B8AS73_ORYSI; Uncharacterized protein | ||||
STRING | OS04T0304400-01 | 1e-144 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.1 | 5e-64 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|