PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015871-PA
Common NameOsI_14787
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 345aa    MW: 35296.9 Da    PI: 5.8883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015871-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008244266123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F +   L  H+r+H
  BGIOSGA015871-PA 244 HECSICGAEFASGQALGGHMRRH 266
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-11135160IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-8135158No hitNo description
PROSITE profilePS5015710.201136163IPR007087Zinc finger, C2H2
SMARTSM003550.24136158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-8239266No hitNo description
PfamPF139121.5E-12243267IPR007087Zinc finger, C2H2
SMARTSM003550.016244266IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263244271IPR007087Zinc finger, C2H2
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGVQEEAALA AAVVKGKRSK RQRAHAAAAV VVPIAASATA EEEESMESSL SLSGGAAAEG  60
SSTTSPLLTT TTTARGDEAV SGCVTEEEED MALCLMLLAS GGHGERAPDA EAVAAKEAKF  120
RSRRPADGAG AGEFVYECKT CSKCFPSFQA LGGHRTSHKK PRLVAPPATT EPAADDKVKP  180
AIPETAAAAA EEKPPKPSPP RPPASRPIAT DPTVLAIPVI PKQEVLDANS AAAIASVSKQ  240
PRVHECSICG AEFASGQALG GHMRRHRPLI PASASSAVVS VLDAVDAPRQ KEKSLLELDL  300
NMPAPCDDAA AETTTSSAAT SPAFAFAVSD RSPLLVPAAL VGCHY
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166340100.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8336970.0CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634434.11e-151zinc finger protein ZAT5
TrEMBLA0A0E0GXL20.0A0A0E0GXL2_ORYNI; ZOS4
TrEMBLA2XQ810.0A2XQ81_ORYSI; Uncharacterized protein
TrEMBLQ01MU40.0Q01MU4_ORYSA; OSIGBa0102O13.12 protein
STRINGONIVA04G01780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-27C2H2 family protein