PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015781-PA
Common NameOsI_14623
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 478aa    MW: 50101.3 Da    PI: 9.6301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015781-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05240262223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        C+ Cg++F+  ++L++H+   H
  BGIOSGA015781-PA 240 ACSQCGEVFTKADSLEHHQAIrH 262
                       6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.619239267IPR007087Zinc finger, C2H2
PROSITE patternPS000280239262IPR007087Zinc finger, C2H2
SuperFamilySSF563996.76E-17264475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MALSTLLLPS SSSSSKTVTA TDTSDRRRHH HHHNHTKRKK KPPPPPLSPT PRTPPPAGSG  60
SHRAMAASSK KSTKQVVAAK TTTGHRPKKA AAAPTTPSRG APSASAAPVS SSWEQLKSLL  120
SCRSATSAAR VHDPAAPSSA LSRLRSHGAG ACGASLCAIR DVVDAASSAS AASTAAASLD  180
RDTTPLTRSS RRAHRAATSS SGGGGGHHAS LRGLSGCYEC RAINVEPMSR RYPRPRELCA  240
CSQCGEVFTK ADSLEHHQAI RHAVSELGPE DSGRNIVEII FKSSWQKRDR PICQIDRILK  300
VHNAARTVAR FEAYRDAVRT RCRATDARAA ADGNELLRFH PAALACPLGL NGATSLCDDD  360
DACGVCAAIR HGFAPWAGAH PLGVRTTASS GRAHDCGAAA VAAQQAGGCR AMLVCRVIAG  420
RVRRNDDDGG AEEEEGAFDS VAGDEAASSV YGNLEELFVA NPRAILPCFV VIYRVVPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12540RRRHHHHHNHTKRKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.277270.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154568830.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2267730.0EU226773.1 Oryza sativa Indica Group isolate B01 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634299.10.0uncharacterized protein LOC4334944
TrEMBLB8AUB20.0B8AUB2_ORYSI; Uncharacterized protein
STRINGONIVA12G09670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.18e-67C2H2-like zinc finger protein